Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20241 and SM_b20242 overlap by 4 nucleotides SM_b20242 and SM_b20243 are separated by 4 nucleotides
SM_b20241: SM_b20241 - hypothetical protein, at 245,375 to 246,460
_b20241
SM_b20242: SM_b20242 - hypothetical protein, at 246,457 to 247,587
_b20242
SM_b20243: SM_b20243 - glycosyltransferase, at 247,592 to 248,743
_b20243
Position (kb) 246
247
248 Strain fitness (log2 ratio) -1
0
1 at 245.599 kb on - strand at 245.754 kb on + strand, within SM_b20241 at 245.755 kb on - strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.962 kb on - strand, within SM_b20241 at 245.997 kb on + strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.345 kb on + strand, within SM_b20241 at 246.346 kb on - strand, within SM_b20241 at 246.399 kb on + strand at 246.400 kb on - strand at 246.460 kb on + strand at 246.461 kb on - strand at 246.510 kb on - strand at 246.792 kb on - strand, within SM_b20242 at 246.873 kb on - strand, within SM_b20242 at 247.074 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.096 kb on - strand, within SM_b20242 at 247.127 kb on + strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.170 kb on - strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.368 kb on - strand, within SM_b20242 at 247.432 kb on + strand, within SM_b20242 at 247.572 kb on - strand at 247.819 kb on - strand, within SM_b20243 at 247.894 kb on - strand, within SM_b20243 at 248.042 kb on + strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.158 kb on + strand, within SM_b20243 at 248.161 kb on - strand, within SM_b20243 at 248.161 kb on - strand, within SM_b20243 at 248.191 kb on - strand, within SM_b20243 at 248.194 kb on + strand, within SM_b20243
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 245,599 - +0.7 245,754 + SM_b20241 0.35 -0.8 245,755 - SM_b20241 0.35 +0.1 245,961 + SM_b20241 0.54 -1.1 245,961 + SM_b20241 0.54 -0.3 245,961 + SM_b20241 0.54 -0.7 245,962 - SM_b20241 0.54 +1.0 245,997 + SM_b20241 0.57 -1.0 246,274 - SM_b20241 0.83 -0.1 246,274 - SM_b20241 0.83 +0.1 246,345 + SM_b20241 0.89 +0.7 246,346 - SM_b20241 0.89 -1.5 246,399 + +0.2 246,400 - +1.3 246,460 + -0.1 246,461 - +0.1 246,510 - +0.1 246,792 - SM_b20242 0.30 -1.0 246,873 - SM_b20242 0.37 -0.5 247,074 + SM_b20242 0.55 -0.2 247,095 + SM_b20242 0.56 -0.1 247,095 + SM_b20242 0.56 -0.8 247,096 - SM_b20242 0.56 +0.1 247,127 + SM_b20242 0.59 -0.5 247,128 - SM_b20242 0.59 -0.8 247,128 - SM_b20242 0.59 -0.3 247,170 - SM_b20242 0.63 +0.2 247,367 + SM_b20242 0.80 +0.3 247,367 + SM_b20242 0.80 -0.4 247,368 - SM_b20242 0.81 -0.9 247,432 + SM_b20242 0.86 -0.6 247,572 - -0.1 247,819 - SM_b20243 0.20 -1.2 247,894 - SM_b20243 0.26 +0.0 248,042 + SM_b20243 0.39 -1.6 248,043 - SM_b20243 0.39 +1.0 248,043 - SM_b20243 0.39 +0.1 248,043 - SM_b20243 0.39 -0.4 248,158 + SM_b20243 0.49 -0.1 248,161 - SM_b20243 0.49 +0.7 248,161 - SM_b20243 0.49 -0.0 248,191 - SM_b20243 0.52 -0.6 248,194 + SM_b20243 0.52 -0.3
Or see this region's nucleotide sequence