Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20143

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20141 and SM_b20142 overlap by 8 nucleotidesSM_b20142 and SM_b20143 are separated by 14 nucleotidesSM_b20143 and SM_b20144 are separated by 85 nucleotides SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455 _b20141 SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371 _b20142 SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300 _b20143 SM_b20144: SM_b20144 - ABC transporter oligopeptide-binding protein, at 158,386 to 159,891 _b20144 Position (kb) 157 158 159Strain fitness (log2 ratio) -2 -1 0 1 2 3at 156.599 kb on + strand, within SM_b20142at 156.599 kb on + strand, within SM_b20142at 156.599 kb on + strand, within SM_b20142at 156.695 kb on + strand, within SM_b20142at 156.695 kb on + strand, within SM_b20142at 156.917 kb on + strand, within SM_b20142at 156.917 kb on + strand, within SM_b20142at 156.922 kb on + strand, within SM_b20142at 156.922 kb on + strand, within SM_b20142at 156.922 kb on + strand, within SM_b20142at 156.923 kb on - strand, within SM_b20142at 157.243 kb on + strand, within SM_b20142at 157.244 kb on - strand, within SM_b20142at 157.244 kb on - strand, within SM_b20142at 157.244 kb on - strand, within SM_b20142at 157.417 kb on + strandat 157.417 kb on + strandat 157.551 kb on - strand, within SM_b20143at 158.232 kb on + strandat 158.232 kb on + strandat 158.233 kb on - strandat 158.522 kb on + strandat 158.522 kb on + strandat 158.639 kb on + strand, within SM_b20144at 158.735 kb on + strand, within SM_b20144at 158.735 kb on + strand, within SM_b20144at 158.736 kb on - strand, within SM_b20144at 158.738 kb on + strand, within SM_b20144at 158.739 kb on - strand, within SM_b20144at 158.879 kb on - strand, within SM_b20144at 158.936 kb on + strand, within SM_b20144at 159.096 kb on + strand, within SM_b20144at 159.116 kb on + strand, within SM_b20144at 159.117 kb on - strand, within SM_b20144at 159.138 kb on - strand, within SM_b20144

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
156,599 + SM_b20142 0.16 +0.7
156,599 + SM_b20142 0.16 +0.3
156,599 + SM_b20142 0.16 -1.3
156,695 + SM_b20142 0.27 +1.6
156,695 + SM_b20142 0.27 -0.8
156,917 + SM_b20142 0.51 -1.1
156,917 + SM_b20142 0.51 -0.6
156,922 + SM_b20142 0.51 +0.7
156,922 + SM_b20142 0.51 +0.4
156,922 + SM_b20142 0.51 -0.3
156,923 - SM_b20142 0.51 -1.4
157,243 + SM_b20142 0.86 -1.7
157,244 - SM_b20142 0.86 +0.2
157,244 - SM_b20142 0.86 +0.3
157,244 - SM_b20142 0.86 -0.3
157,417 + +0.0
157,417 + +1.2
157,551 - SM_b20143 0.18 -2.1
158,232 + +0.7
158,232 + -0.8
158,233 - -0.0
158,522 + +0.2
158,522 + -0.3
158,639 + SM_b20144 0.17 -1.7
158,735 + SM_b20144 0.23 +0.8
158,735 + SM_b20144 0.23 +0.4
158,736 - SM_b20144 0.23 -0.0
158,738 + SM_b20144 0.23 -0.6
158,739 - SM_b20144 0.23 +0.2
158,879 - SM_b20144 0.33 -0.7
158,936 + SM_b20144 0.37 +0.7
159,096 + SM_b20144 0.47 +0.7
159,116 + SM_b20144 0.48 -0.7
159,117 - SM_b20144 0.49 +0.4
159,138 - SM_b20144 0.50 +3.1

Or see this region's nucleotide sequence