Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20124 and SM_b20125 are separated by 9 nucleotides SM_b20125 and SM_b20126 are separated by 8 nucleotides
SM_b20124: SM_b20124 - sugar ABC transporter ATP-binding protein, at 135,279 to 136,805
_b20124
SM_b20125: SM_b20125 - sugar ABC transporter permease, at 136,815 to 137,747
_b20125
SM_b20126: SM_b20126 - sugar ABC transporter permease, at 137,756 to 138,853
_b20126
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 135.821 kb on - strand, within SM_b20124 at 135.972 kb on + strand, within SM_b20124 at 135.972 kb on + strand, within SM_b20124 at 135.973 kb on - strand at 135.973 kb on - strand, within SM_b20124 at 136.069 kb on + strand, within SM_b20124 at 136.070 kb on - strand, within SM_b20124 at 136.140 kb on - strand, within SM_b20124 at 136.334 kb on - strand, within SM_b20124 at 136.449 kb on + strand, within SM_b20124 at 136.449 kb on + strand, within SM_b20124 at 136.450 kb on - strand, within SM_b20124 at 136.494 kb on + strand, within SM_b20124 at 136.494 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.591 kb on - strand, within SM_b20124 at 136.591 kb on - strand, within SM_b20124 at 136.828 kb on + strand at 136.875 kb on + strand at 136.875 kb on + strand at 136.876 kb on - strand at 136.876 kb on - strand at 136.876 kb on - strand at 136.924 kb on + strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 137.145 kb on - strand, within SM_b20125 at 137.249 kb on - strand, within SM_b20125 at 137.290 kb on + strand, within SM_b20125 at 137.290 kb on + strand, within SM_b20125 at 137.291 kb on - strand, within SM_b20125 at 137.732 kb on + strand at 137.732 kb on + strand at 137.733 kb on - strand at 137.736 kb on + strand at 137.736 kb on + strand at 137.736 kb on + strand at 137.976 kb on + strand, within SM_b20126 at 137.977 kb on - strand, within SM_b20126 at 138.147 kb on + strand, within SM_b20126 at 138.177 kb on + strand, within SM_b20126 at 138.177 kb on + strand, within SM_b20126 at 138.177 kb on + strand, within SM_b20126 at 138.177 kb on + strand, within SM_b20126 at 138.178 kb on - strand, within SM_b20126 at 138.325 kb on - strand, within SM_b20126 at 138.337 kb on + strand, within SM_b20126 at 138.348 kb on + strand, within SM_b20126 at 138.348 kb on + strand, within SM_b20126 at 138.348 kb on + strand, within SM_b20126 at 138.348 kb on + strand, within SM_b20126 at 138.349 kb on - strand, within SM_b20126 at 138.390 kb on + strand, within SM_b20126 at 138.465 kb on + strand, within SM_b20126 at 138.465 kb on + strand, within SM_b20126 at 138.531 kb on - strand, within SM_b20126
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 135,821 - SM_b20124 0.35 -3.1 135,972 + SM_b20124 0.45 +1.2 135,972 + SM_b20124 0.45 -1.0 135,973 - +1.7 135,973 - SM_b20124 0.45 -0.2 136,069 + SM_b20124 0.52 +0.1 136,070 - SM_b20124 0.52 +2.6 136,140 - SM_b20124 0.56 -0.1 136,334 - SM_b20124 0.69 +0.7 136,449 + SM_b20124 0.77 -0.6 136,449 + SM_b20124 0.77 +0.7 136,450 - SM_b20124 0.77 -0.2 136,494 + SM_b20124 0.80 -1.9 136,494 + SM_b20124 0.80 +0.5 136,501 + SM_b20124 0.80 -0.3 136,501 + SM_b20124 0.80 -1.1 136,501 + SM_b20124 0.80 +0.5 136,590 + SM_b20124 0.86 -0.6 136,590 + SM_b20124 0.86 +0.6 136,590 + SM_b20124 0.86 -0.7 136,591 - SM_b20124 0.86 -0.6 136,591 - SM_b20124 0.86 -0.2 136,828 + -0.2 136,875 + -0.2 136,875 + +0.1 136,876 - +0.7 136,876 - -1.1 136,876 - +0.1 136,924 + SM_b20125 0.12 +1.1 136,973 - SM_b20125 0.17 +4.3 136,973 - SM_b20125 0.17 +0.5 136,973 - SM_b20125 0.17 -0.5 136,973 - SM_b20125 0.17 +0.5 137,145 - SM_b20125 0.35 +0.7 137,249 - SM_b20125 0.47 -0.9 137,290 + SM_b20125 0.51 +0.7 137,290 + SM_b20125 0.51 -0.1 137,291 - SM_b20125 0.51 +0.2 137,732 + +0.2 137,732 + +0.7 137,733 - +0.1 137,736 + -0.1 137,736 + -0.3 137,736 + +0.6 137,976 + SM_b20126 0.20 -1.8 137,977 - SM_b20126 0.20 +0.2 138,147 + SM_b20126 0.36 -0.1 138,177 + SM_b20126 0.38 -0.3 138,177 + SM_b20126 0.38 +1.3 138,177 + SM_b20126 0.38 -0.5 138,177 + SM_b20126 0.38 +0.6 138,178 - SM_b20126 0.38 +0.6 138,325 - SM_b20126 0.52 -0.9 138,337 + SM_b20126 0.53 -0.9 138,348 + SM_b20126 0.54 -1.1 138,348 + SM_b20126 0.54 -0.5 138,348 + SM_b20126 0.54 -0.3 138,348 + SM_b20126 0.54 -1.4 138,349 - SM_b20126 0.54 +0.2 138,390 + SM_b20126 0.58 +0.4 138,465 + SM_b20126 0.65 -0.5 138,465 + SM_b20126 0.65 +0.2 138,531 - SM_b20126 0.71 -0.9
Or see this region's nucleotide sequence