Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20082 and SM_b20083 are separated by 291 nucleotides SM_b20083 and SM_b20084 are separated by 111 nucleotides SM_b20084 and SM_b20085 are separated by 51 nucleotides SM_b20085 and SM_b20086 are separated by 197 nucleotides SM_b20086 and SM_b20087 are separated by 22 nucleotides
SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260
_b20082
SM_b20083: SM_b20083 - hypothetical protein, at 94,552 to 94,791
_b20083
SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076
_b20084
SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274
_b20085
SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774
_b20086
SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402
_b20087
Position (kb)
95
96 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 94.379 kb on - strand at 94.447 kb on - strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.552 kb on - strand at 94.552 kb on - strand at 94.552 kb on - strand at 94.714 kb on + strand, within SM_b20083 at 94.714 kb on + strand, within SM_b20083 at 94.714 kb on + strand, within SM_b20083 at 94.715 kb on - strand, within SM_b20083 at 94.829 kb on + strand at 94.830 kb on - strand at 94.856 kb on - strand at 94.904 kb on + strand at 94.904 kb on + strand at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.970 kb on + strand, within SM_b20084 at 94.979 kb on - strand, within SM_b20084 at 95.036 kb on - strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.058 kb on + strand, within SM_b20084 at 95.076 kb on + strand at 95.077 kb on - strand at 95.260 kb on + strand at 95.268 kb on + strand at 95.269 kb on - strand at 95.694 kb on - strand, within SM_b20086 at 95.694 kb on - strand, within SM_b20086 at 95.716 kb on - strand, within SM_b20086 at 95.762 kb on - strand at 95.828 kb on - strand at 95.887 kb on - strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.943 kb on - strand, within SM_b20087 at 96.029 kb on + strand, within SM_b20087 at 96.030 kb on - strand, within SM_b20087
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 94,379 - +0.3 94,447 - -1.0 94,551 + -0.4 94,551 + -0.1 94,551 + +1.7 94,551 + +0.4 94,552 - -0.1 94,552 - -0.3 94,552 - -0.1 94,714 + SM_b20083 0.68 +0.7 94,714 + SM_b20083 0.68 -2.1 94,714 + SM_b20083 0.68 -0.0 94,715 - SM_b20083 0.68 +1.3 94,829 + +0.3 94,830 - +0.1 94,856 - -0.7 94,904 + -0.2 94,904 + +1.0 94,957 - SM_b20084 0.31 -1.0 94,957 - SM_b20084 0.31 +0.2 94,957 - SM_b20084 0.31 -0.0 94,957 - SM_b20084 0.31 -0.1 94,970 + SM_b20084 0.39 -0.3 94,979 - SM_b20084 0.44 +0.9 95,036 - SM_b20084 0.76 +0.7 95,046 + SM_b20084 0.82 +0.7 95,046 + SM_b20084 0.82 +0.1 95,046 + SM_b20084 0.82 -0.7 95,058 + SM_b20084 0.89 +0.0 95,076 + -0.3 95,077 - +0.1 95,260 + -0.0 95,268 + -0.4 95,269 - +1.1 95,694 - SM_b20086 0.73 -0.6 95,694 - SM_b20086 0.73 +1.2 95,716 - SM_b20086 0.81 -0.3 95,762 - -1.5 95,828 - -0.1 95,887 - SM_b20087 0.15 -0.0 95,942 + SM_b20087 0.24 +2.9 95,942 + SM_b20087 0.24 -0.7 95,943 - SM_b20087 0.24 +0.2 96,029 + SM_b20087 0.38 -0.5 96,030 - SM_b20087 0.38 -0.3
Or see this region's nucleotide sequence