Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20080 and SM_b20081 are separated by 19 nucleotides SM_b20081 and SM_b20082 overlap by 4 nucleotides SM_b20082 and SM_b20083 are separated by 291 nucleotides SM_b20083 and SM_b20084 are separated by 111 nucleotides SM_b20084 and SM_b20085 are separated by 51 nucleotides
SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715
_b20080
SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445
_b20081
SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260
_b20082
SM_b20083: SM_b20083 - hypothetical protein, at 94,552 to 94,791
_b20083
SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076
_b20084
SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274
_b20085
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 92.499 kb on - strand, within SM_b20080 at 92.563 kb on + strand, within SM_b20080 at 92.563 kb on + strand, within SM_b20080 at 92.659 kb on + strand at 92.829 kb on + strand, within SM_b20081 at 92.830 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.379 kb on + strand at 93.382 kb on - strand at 93.382 kb on - strand at 93.382 kb on - strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.405 kb on - strand at 93.454 kb on - strand at 93.542 kb on + strand, within SM_b20082 at 93.543 kb on - strand, within SM_b20082 at 93.713 kb on + strand, within SM_b20082 at 93.713 kb on + strand, within SM_b20082 at 94.002 kb on - strand, within SM_b20082 at 94.379 kb on - strand at 94.447 kb on - strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.552 kb on - strand at 94.552 kb on - strand at 94.552 kb on - strand at 94.714 kb on + strand, within SM_b20083 at 94.714 kb on + strand, within SM_b20083 at 94.714 kb on + strand, within SM_b20083 at 94.715 kb on - strand, within SM_b20083 at 94.829 kb on + strand at 94.830 kb on - strand at 94.856 kb on - strand at 94.904 kb on + strand at 94.904 kb on + strand at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.970 kb on + strand, within SM_b20084 at 94.979 kb on - strand, within SM_b20084 at 95.036 kb on - strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.058 kb on + strand, within SM_b20084 at 95.076 kb on + strand at 95.077 kb on - strand at 95.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 92,499 - SM_b20080 0.81 +0.3 92,563 + SM_b20080 0.87 +0.2 92,563 + SM_b20080 0.87 +0.6 92,659 + -1.2 92,829 + SM_b20081 0.13 -0.1 92,830 - SM_b20081 0.13 +3.2 93,089 - SM_b20081 0.50 -1.1 93,089 - SM_b20081 0.50 -0.6 93,089 - SM_b20081 0.50 +0.2 93,379 + -0.1 93,382 - +0.2 93,382 - +0.1 93,382 - -0.5 93,404 + -0.9 93,404 + -2.0 93,404 + -1.1 93,404 + -0.1 93,405 - +0.1 93,454 - +0.5 93,542 + SM_b20082 0.12 -0.7 93,543 - SM_b20082 0.12 -1.2 93,713 + SM_b20082 0.33 -3.4 93,713 + SM_b20082 0.33 -1.4 94,002 - SM_b20082 0.68 +1.0 94,379 - +0.3 94,447 - -1.0 94,551 + -0.4 94,551 + -0.1 94,551 + +1.7 94,551 + +0.4 94,552 - -0.1 94,552 - -0.3 94,552 - -0.1 94,714 + SM_b20083 0.68 +0.7 94,714 + SM_b20083 0.68 -2.1 94,714 + SM_b20083 0.68 -0.0 94,715 - SM_b20083 0.68 +1.3 94,829 + +0.3 94,830 - +0.1 94,856 - -0.7 94,904 + -0.2 94,904 + +1.0 94,957 - SM_b20084 0.31 -1.0 94,957 - SM_b20084 0.31 +0.2 94,957 - SM_b20084 0.31 -0.0 94,957 - SM_b20084 0.31 -0.1 94,970 + SM_b20084 0.39 -0.3 94,979 - SM_b20084 0.44 +0.9 95,036 - SM_b20084 0.76 +0.7 95,046 + SM_b20084 0.82 +0.7 95,046 + SM_b20084 0.82 +0.1 95,046 + SM_b20084 0.82 -0.7 95,058 + SM_b20084 0.89 +0.0 95,076 + -0.3 95,077 - +0.1 95,260 + -0.0
Or see this region's nucleotide sequence