Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20073 and SM_b20074 are separated by 195 nucleotides SM_b20074 and SM_b20075 are separated by 48 nucleotides SM_b20075 and SM_b20076 are separated by 98 nucleotides SM_b20076 and SM_b20077 are separated by 99 nucleotides
SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188
_b20073
SM_b20074: SM_b20074 - hypothetical protein, at 83,384 to 83,626
_b20074
SM_b20075: SM_b20075 - hypothetical protein, at 83,675 to 83,866
_b20075
SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981
_b20076
SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745
_b20077
Position (kb)
83
84
85 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 82.971 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 83.268 kb on - strand at 83.380 kb on + strand at 83.380 kb on + strand at 83.381 kb on - strand at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.759 kb on + strand, within SM_b20075 at 83.760 kb on - strand, within SM_b20075 at 83.927 kb on + strand at 83.927 kb on + strand at 83.928 kb on - strand at 83.928 kb on - strand at 83.964 kb on + strand at 83.965 kb on - strand at 83.965 kb on - strand at 84.215 kb on + strand, within SM_b20076 at 84.517 kb on + strand, within SM_b20076 at 84.562 kb on + strand, within SM_b20076 at 84.563 kb on - strand, within SM_b20076 at 84.598 kb on + strand, within SM_b20076 at 84.598 kb on + strand, within SM_b20076 at 84.599 kb on - strand, within SM_b20076 at 85.032 kb on + strand at 85.033 kb on - strand at 85.033 kb on - strand at 85.035 kb on + strand at 85.035 kb on + strand at 85.035 kb on + strand at 85.036 kb on - strand at 85.036 kb on - strand at 85.036 kb on - strand at 85.384 kb on - strand, within SM_b20077 at 85.384 kb on - strand, within SM_b20077 at 85.606 kb on + strand, within SM_b20077 at 85.606 kb on + strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.826 kb on - strand, within SM_b20077
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 82,971 + SM_b20073 0.75 -1.0 82,971 + SM_b20073 0.75 -0.5 82,978 + SM_b20073 0.75 -1.5 82,978 + SM_b20073 0.75 -0.3 83,268 - +0.1 83,380 + -0.6 83,380 + -0.0 83,381 - +0.7 83,555 + SM_b20074 0.70 -0.5 83,555 + SM_b20074 0.70 -0.3 83,555 + SM_b20074 0.70 -1.2 83,555 + SM_b20074 0.70 +2.3 83,556 - SM_b20074 0.71 -1.4 83,556 - SM_b20074 0.71 -1.4 83,556 - SM_b20074 0.71 -3.5 83,759 + SM_b20075 0.44 -1.3 83,760 - SM_b20075 0.44 -1.1 83,927 + -1.9 83,927 + -1.0 83,928 - +0.7 83,928 - -0.8 83,964 + -0.3 83,965 - -0.6 83,965 - +0.2 84,215 + SM_b20076 0.25 +0.8 84,517 + SM_b20076 0.54 -1.1 84,562 + SM_b20076 0.59 -0.9 84,563 - SM_b20076 0.59 -0.3 84,598 + SM_b20076 0.62 -0.3 84,598 + SM_b20076 0.62 -0.6 84,599 - SM_b20076 0.62 -1.0 85,032 + +0.0 85,033 - +0.3 85,033 - +0.2 85,035 + +0.5 85,035 + -0.6 85,035 + -0.1 85,036 - +0.6 85,036 - -0.4 85,036 - -0.3 85,384 - SM_b20077 0.18 +1.0 85,384 - SM_b20077 0.18 -0.1 85,606 + SM_b20077 0.32 -0.1 85,606 + SM_b20077 0.32 +0.3 85,607 - SM_b20077 0.32 -1.3 85,607 - SM_b20077 0.32 -0.5 85,607 - SM_b20077 0.32 +0.3 85,826 - SM_b20077 0.45 -0.2
Or see this region's nucleotide sequence