Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20076

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20073 and SM_b20074 are separated by 195 nucleotidesSM_b20074 and SM_b20075 are separated by 48 nucleotidesSM_b20075 and SM_b20076 are separated by 98 nucleotidesSM_b20076 and SM_b20077 are separated by 99 nucleotides SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188 _b20073 SM_b20074: SM_b20074 - hypothetical protein, at 83,384 to 83,626 _b20074 SM_b20075: SM_b20075 - hypothetical protein, at 83,675 to 83,866 _b20075 SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981 _b20076 SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745 _b20077 Position (kb) 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 82.971 kb on + strand, within SM_b20073at 82.971 kb on + strand, within SM_b20073at 82.978 kb on + strand, within SM_b20073at 82.978 kb on + strand, within SM_b20073at 83.268 kb on - strandat 83.380 kb on + strandat 83.380 kb on + strandat 83.381 kb on - strandat 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.759 kb on + strand, within SM_b20075at 83.760 kb on - strand, within SM_b20075at 83.927 kb on + strandat 83.927 kb on + strandat 83.928 kb on - strandat 83.928 kb on - strandat 83.964 kb on + strandat 83.965 kb on - strandat 83.965 kb on - strandat 84.215 kb on + strand, within SM_b20076at 84.517 kb on + strand, within SM_b20076at 84.562 kb on + strand, within SM_b20076at 84.563 kb on - strand, within SM_b20076at 84.598 kb on + strand, within SM_b20076at 84.598 kb on + strand, within SM_b20076at 84.599 kb on - strand, within SM_b20076at 85.032 kb on + strandat 85.033 kb on - strandat 85.033 kb on - strandat 85.035 kb on + strandat 85.035 kb on + strandat 85.035 kb on + strandat 85.036 kb on - strandat 85.036 kb on - strandat 85.036 kb on - strandat 85.384 kb on - strand, within SM_b20077at 85.384 kb on - strand, within SM_b20077at 85.606 kb on + strand, within SM_b20077at 85.606 kb on + strand, within SM_b20077at 85.607 kb on - strand, within SM_b20077at 85.607 kb on - strand, within SM_b20077at 85.607 kb on - strand, within SM_b20077at 85.826 kb on - strand, within SM_b20077

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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82,971 + SM_b20073 0.75 -1.0
82,971 + SM_b20073 0.75 -0.5
82,978 + SM_b20073 0.75 -1.5
82,978 + SM_b20073 0.75 -0.3
83,268 - +0.1
83,380 + -0.6
83,380 + -0.0
83,381 - +0.7
83,555 + SM_b20074 0.70 -0.5
83,555 + SM_b20074 0.70 -0.3
83,555 + SM_b20074 0.70 -1.2
83,555 + SM_b20074 0.70 +2.3
83,556 - SM_b20074 0.71 -1.4
83,556 - SM_b20074 0.71 -1.4
83,556 - SM_b20074 0.71 -3.5
83,759 + SM_b20075 0.44 -1.3
83,760 - SM_b20075 0.44 -1.1
83,927 + -1.9
83,927 + -1.0
83,928 - +0.7
83,928 - -0.8
83,964 + -0.3
83,965 - -0.6
83,965 - +0.2
84,215 + SM_b20076 0.25 +0.8
84,517 + SM_b20076 0.54 -1.1
84,562 + SM_b20076 0.59 -0.9
84,563 - SM_b20076 0.59 -0.3
84,598 + SM_b20076 0.62 -0.3
84,598 + SM_b20076 0.62 -0.6
84,599 - SM_b20076 0.62 -1.0
85,032 + +0.0
85,033 - +0.3
85,033 - +0.2
85,035 + +0.5
85,035 + -0.6
85,035 + -0.1
85,036 - +0.6
85,036 - -0.4
85,036 - -0.3
85,384 - SM_b20077 0.18 +1.0
85,384 - SM_b20077 0.18 -0.1
85,606 + SM_b20077 0.32 -0.1
85,606 + SM_b20077 0.32 +0.3
85,607 - SM_b20077 0.32 -1.3
85,607 - SM_b20077 0.32 -0.5
85,607 - SM_b20077 0.32 +0.3
85,826 - SM_b20077 0.45 -0.2

Or see this region's nucleotide sequence