Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20072 and SM_b20073 are separated by 162 nucleotides SM_b20073 and SM_b20074 are separated by 195 nucleotides SM_b20074 and SM_b20075 are separated by 48 nucleotides SM_b20075 and SM_b20076 are separated by 98 nucleotides
SM_b20072: SM_b20072 - rhizopine binding protein, at 81,239 to 82,168
_b20072
SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188
_b20073
SM_b20074: SM_b20074 - hypothetical protein, at 83,384 to 83,626
_b20074
SM_b20075: SM_b20075 - hypothetical protein, at 83,675 to 83,866
_b20075
SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981
_b20076
Position (kb)
82
83
84 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 81.392 kb on + strand, within SM_b20072 at 81.392 kb on + strand, within SM_b20072 at 81.393 kb on - strand, within SM_b20072 at 81.721 kb on - strand, within SM_b20072 at 81.853 kb on - strand, within SM_b20072 at 81.853 kb on - strand, within SM_b20072 at 82.157 kb on + strand at 82.157 kb on + strand at 82.158 kb on - strand at 82.158 kb on - strand at 82.172 kb on + strand at 82.278 kb on + strand at 82.279 kb on - strand at 82.279 kb on - strand at 82.281 kb on - strand at 82.380 kb on + strand at 82.381 kb on - strand at 82.381 kb on - strand at 82.381 kb on - strand at 82.450 kb on + strand, within SM_b20073 at 82.450 kb on + strand, within SM_b20073 at 82.451 kb on - strand, within SM_b20073 at 82.547 kb on + strand, within SM_b20073 at 82.548 kb on - strand, within SM_b20073 at 82.617 kb on + strand, within SM_b20073 at 82.618 kb on - strand, within SM_b20073 at 82.716 kb on + strand, within SM_b20073 at 82.716 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 83.268 kb on - strand at 83.380 kb on + strand at 83.380 kb on + strand at 83.381 kb on - strand at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.759 kb on + strand, within SM_b20075 at 83.760 kb on - strand, within SM_b20075 at 83.927 kb on + strand at 83.927 kb on + strand at 83.928 kb on - strand at 83.928 kb on - strand at 83.964 kb on + strand at 83.965 kb on - strand at 83.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 81,392 + SM_b20072 0.16 -0.4 81,392 + SM_b20072 0.16 -0.4 81,393 - SM_b20072 0.17 -1.0 81,721 - SM_b20072 0.52 -0.5 81,853 - SM_b20072 0.66 +1.5 81,853 - SM_b20072 0.66 +0.5 82,157 + -0.2 82,157 + -0.3 82,158 - -1.4 82,158 - -0.4 82,172 + +1.3 82,278 + +1.0 82,279 - -0.0 82,279 - +0.4 82,281 - -0.9 82,380 + -0.9 82,381 - -1.3 82,381 - +0.0 82,381 - +0.5 82,450 + SM_b20073 0.14 +1.3 82,450 + SM_b20073 0.14 -0.1 82,451 - SM_b20073 0.14 -0.1 82,547 + SM_b20073 0.25 -0.6 82,548 - SM_b20073 0.25 -0.4 82,617 + SM_b20073 0.33 -0.5 82,618 - SM_b20073 0.33 +1.1 82,716 + SM_b20073 0.45 +0.2 82,716 + SM_b20073 0.45 +0.9 82,971 + SM_b20073 0.75 -1.0 82,971 + SM_b20073 0.75 -0.5 82,978 + SM_b20073 0.75 -1.5 82,978 + SM_b20073 0.75 -0.3 83,268 - +0.1 83,380 + -0.6 83,380 + -0.0 83,381 - +0.7 83,555 + SM_b20074 0.70 -0.5 83,555 + SM_b20074 0.70 -0.3 83,555 + SM_b20074 0.70 -1.2 83,555 + SM_b20074 0.70 +2.3 83,556 - SM_b20074 0.71 -1.4 83,556 - SM_b20074 0.71 -1.4 83,556 - SM_b20074 0.71 -3.5 83,759 + SM_b20075 0.44 -1.3 83,760 - SM_b20075 0.44 -1.1 83,927 + -1.9 83,927 + -1.0 83,928 - +0.7 83,928 - -0.8 83,964 + -0.3 83,965 - -0.6 83,965 - +0.2
Or see this region's nucleotide sequence