Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20067 and SM_b20068 are separated by 214 nucleotides SM_b20068 and SM_b20069 are separated by 533 nucleotides SM_b20069 and SM_b20070 are separated by 260 nucleotides
SM_b20067: SM_b20067 - hypothetical protein, at 74,726 to 75,247
_b20067
SM_b20068: SM_b20068 - hypothetical protein, at 75,462 to 75,671
_b20068
SM_b20069: SM_b20069 - amino acid carrier protein, at 76,205 to 77,608
_b20069
SM_b20070: SM_b20070 - sulfate permease, at 77,869 to 79,356
_b20070
Position (kb) 76
77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 75.371 kb on + strand at 75.808 kb on + strand at 75.838 kb on + strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.924 kb on + strand at 75.924 kb on + strand at 75.940 kb on - strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.965 kb on - strand at 75.965 kb on - strand at 75.965 kb on - strand at 75.965 kb on - strand at 75.968 kb on + strand at 75.968 kb on + strand at 75.968 kb on + strand at 75.968 kb on + strand at 75.968 kb on + strand at 75.969 kb on - strand at 75.969 kb on - strand at 75.998 kb on + strand at 75.998 kb on + strand at 75.999 kb on - strand at 75.999 kb on - strand at 75.999 kb on - strand at 76.228 kb on + strand at 76.228 kb on + strand at 76.338 kb on - strand at 76.338 kb on - strand at 76.338 kb on - strand at 76.397 kb on - strand, within SM_b20069 at 76.472 kb on - strand, within SM_b20069 at 76.558 kb on - strand, within SM_b20069 at 76.610 kb on - strand, within SM_b20069 at 76.723 kb on + strand, within SM_b20069 at 77.264 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.321 kb on + strand, within SM_b20069 at 77.321 kb on + strand, within SM_b20069 at 77.322 kb on - strand, within SM_b20069 at 77.325 kb on - strand, within SM_b20069 at 77.325 kb on - strand, within SM_b20069 at 77.531 kb on + strand at 77.607 kb on - strand at 77.665 kb on + strand at 77.679 kb on + strand at 77.679 kb on + strand at 77.684 kb on - strand at 77.684 kb on - strand at 77.684 kb on - strand at 77.816 kb on - strand at 77.931 kb on + strand at 77.932 kb on - strand at 77.932 kb on - strand at 77.987 kb on + strand at 77.991 kb on + strand at 77.992 kb on - strand at 77.992 kb on - strand at 77.992 kb on - strand at 78.143 kb on + strand, within SM_b20070 at 78.143 kb on + strand, within SM_b20070 at 78.143 kb on + strand, within SM_b20070 at 78.144 kb on - strand, within SM_b20070
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 75,371 + -0.8 75,808 + -1.1 75,838 + -0.0 75,839 - +0.3 75,839 - -1.5 75,839 - +0.7 75,839 - +0.0 75,839 - +0.5 75,839 - +0.1 75,839 - -0.5 75,924 + -0.1 75,924 + -0.9 75,940 - -0.2 75,964 + -0.2 75,964 + -0.9 75,964 + +0.5 75,964 + -0.0 75,964 + -0.7 75,964 + -1.3 75,964 + -0.2 75,965 - +0.2 75,965 - +0.5 75,965 - +0.3 75,965 - +0.7 75,968 + -1.5 75,968 + +0.8 75,968 + +0.1 75,968 + +0.5 75,968 + +0.3 75,969 - -1.9 75,969 - +0.6 75,998 + +0.4 75,998 + +0.8 75,999 - +0.2 75,999 - +0.7 75,999 - -2.1 76,228 + -0.3 76,228 + -1.5 76,338 - -1.3 76,338 - -0.3 76,338 - -1.9 76,397 - SM_b20069 0.14 -0.7 76,472 - SM_b20069 0.19 -0.8 76,558 - SM_b20069 0.25 -0.1 76,610 - SM_b20069 0.29 -1.5 76,723 + SM_b20069 0.37 -0.2 77,264 + SM_b20069 0.75 -2.0 77,271 + SM_b20069 0.76 -1.9 77,271 + SM_b20069 0.76 -0.7 77,271 + SM_b20069 0.76 -3.9 77,321 + SM_b20069 0.79 -1.3 77,321 + SM_b20069 0.79 -1.4 77,322 - SM_b20069 0.80 -0.6 77,325 - SM_b20069 0.80 -2.2 77,325 - SM_b20069 0.80 +0.3 77,531 + -1.7 77,607 - -0.1 77,665 + +0.2 77,679 + -0.1 77,679 + -0.2 77,684 - +0.6 77,684 - -0.1 77,684 - -0.5 77,816 - +3.3 77,931 + +0.3 77,932 - -0.0 77,932 - +0.6 77,987 + -0.4 77,991 + +0.7 77,992 - -0.9 77,992 - -0.2 77,992 - +0.2 78,143 + SM_b20070 0.18 +0.5 78,143 + SM_b20070 0.18 -0.1 78,143 + SM_b20070 0.18 -0.0 78,144 - SM_b20070 0.18 +1.0
Or see this region's nucleotide sequence