Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20065 and SM_b20066 are separated by 166 nucleotides SM_b20066 and SM_b20067 are separated by 3 nucleotides SM_b20067 and SM_b20068 are separated by 214 nucleotides
SM_b20065: SM_b20065 - hypothetical protein, at 73,972 to 74,370
_b20065
SM_b20066: SM_b20066 - hypothetical protein, at 74,537 to 74,722
_b20066
SM_b20067: SM_b20067 - hypothetical protein, at 74,726 to 75,247
_b20067
SM_b20068: SM_b20068 - hypothetical protein, at 75,462 to 75,671
_b20068
Position (kb)
74
75 Strain fitness (log2 ratio)
-1
0
1
2 at 73.650 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.753 kb on - strand at 73.757 kb on - strand at 73.849 kb on + strand at 73.971 kb on + strand at 73.971 kb on + strand at 73.972 kb on - strand at 73.972 kb on - strand at 74.260 kb on + strand at 74.395 kb on - strand at 74.412 kb on - strand at 74.611 kb on - strand at 74.832 kb on + strand, within SM_b20067 at 74.833 kb on - strand, within SM_b20067 at 74.833 kb on - strand, within SM_b20067 at 74.930 kb on - strand, within SM_b20067 at 75.088 kb on + strand, within SM_b20067 at 75.089 kb on - strand, within SM_b20067 at 75.119 kb on + strand, within SM_b20067 at 75.134 kb on - strand, within SM_b20067 at 75.134 kb on - strand, within SM_b20067 at 75.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 73,650 + +0.9 73,752 + +0.4 73,752 + -1.3 73,752 + +1.3 73,752 + -0.1 73,752 + -0.1 73,753 - -0.3 73,757 - +0.4 73,849 + +1.0 73,971 + +0.0 73,971 + -0.7 73,972 - +1.9 73,972 - +0.1 74,260 + +0.7 74,395 - +0.0 74,412 - +0.8 74,611 - -0.0 74,832 + SM_b20067 0.20 +0.9 74,833 - SM_b20067 0.20 +0.4 74,833 - SM_b20067 0.20 +0.3 74,930 - SM_b20067 0.39 +0.5 75,088 + SM_b20067 0.69 +0.4 75,089 - SM_b20067 0.70 +0.1 75,119 + SM_b20067 0.75 -1.3 75,134 - SM_b20067 0.78 -0.1 75,134 - SM_b20067 0.78 +0.1 75,371 + -0.8
Or see this region's nucleotide sequence