Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20054 and SM_b20055 are separated by 147 nucleotides
SM_b20054: SM_b20054 - non-heme chloroperoxidase, at 63,020 to 63,847
_b20054
SM_b20055: SM_b20055 - transcriptional regulator, at 63,995 to 64,984
_b20055
Position (kb)
63
64
65 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 62.999 kb on - strand at 62.999 kb on - strand at 62.999 kb on - strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.067 kb on - strand at 63.067 kb on - strand at 63.099 kb on + strand at 63.110 kb on + strand, within SM_b20054 at 63.351 kb on + strand, within SM_b20054 at 63.352 kb on - strand, within SM_b20054 at 63.397 kb on - strand, within SM_b20054 at 63.699 kb on + strand, within SM_b20054 at 63.737 kb on + strand, within SM_b20054 at 63.737 kb on + strand, within SM_b20054 at 63.807 kb on + strand at 63.807 kb on + strand at 63.807 kb on + strand at 63.895 kb on + strand at 63.895 kb on + strand at 63.895 kb on + strand at 63.896 kb on - strand at 63.963 kb on + strand at 63.963 kb on + strand at 63.964 kb on - strand at 63.964 kb on - strand at 64.561 kb on - strand, within SM_b20055 at 64.619 kb on + strand, within SM_b20055 at 64.886 kb on + strand at 64.949 kb on + strand at 64.949 kb on + strand at 64.949 kb on + strand at 65.064 kb on - strand at 65.246 kb on - strand at 65.255 kb on + strand at 65.255 kb on + strand at 65.255 kb on + strand at 65.256 kb on - strand at 65.256 kb on - strand at 65.256 kb on - strand at 65.256 kb on - strand at 65.256 kb on - strand at 65.257 kb on + strand at 65.257 kb on + strand at 65.257 kb on + strand at 65.257 kb on + strand at 65.258 kb on - strand at 65.258 kb on - strand at 65.258 kb on - strand at 65.278 kb on - strand at 65.278 kb on - strand at 65.278 kb on - strand at 65.299 kb on + strand at 65.300 kb on - strand at 65.300 kb on - strand at 65.300 kb on - strand at 65.300 kb on - strand at 65.300 kb on - strand at 65.300 kb on - strand at 65.302 kb on - strand at 65.302 kb on - strand at 65.369 kb on + strand at 65.369 kb on + strand at 65.369 kb on + strand at 65.369 kb on + strand at 65.369 kb on + strand at 65.370 kb on - strand at 65.370 kb on - strand at 65.370 kb on - strand at 65.370 kb on - strand at 65.370 kb on - strand at 65.484 kb on + strand at 65.485 kb on - strand at 65.553 kb on - strand at 65.553 kb on - strand at 65.626 kb on + strand at 65.681 kb on + strand at 65.681 kb on + strand at 65.682 kb on - strand at 65.682 kb on - strand at 65.682 kb on - strand at 65.682 kb on - strand at 65.743 kb on + strand at 65.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 62,999 - +0.6 62,999 - +0.0 62,999 - -1.1 63,066 + +0.7 63,066 + +0.3 63,066 + -2.6 63,066 + +1.8 63,067 - -0.3 63,067 - +0.7 63,099 + -0.3 63,110 + SM_b20054 0.11 -0.1 63,351 + SM_b20054 0.40 -0.2 63,352 - SM_b20054 0.40 +0.9 63,397 - SM_b20054 0.46 -0.2 63,699 + SM_b20054 0.82 +0.5 63,737 + SM_b20054 0.87 -0.1 63,737 + SM_b20054 0.87 -1.1 63,807 + +0.5 63,807 + -0.3 63,807 + -0.2 63,895 + +0.2 63,895 + +0.4 63,895 + -0.1 63,896 - -1.4 63,963 + -0.0 63,963 + -0.6 63,964 - +0.2 63,964 - +0.6 64,561 - SM_b20055 0.57 -2.4 64,619 + SM_b20055 0.63 -1.0 64,886 + -0.8 64,949 + -1.1 64,949 + -0.9 64,949 + +0.2 65,064 - +0.6 65,246 - -0.1 65,255 + -0.4 65,255 + +0.3 65,255 + -2.0 65,256 - -0.0 65,256 - -0.3 65,256 - -0.1 65,256 - -0.3 65,256 - +0.4 65,257 + -0.0 65,257 + +0.1 65,257 + -0.0 65,257 + -0.7 65,258 - -0.3 65,258 - -0.6 65,258 - -0.0 65,278 - -0.3 65,278 - -0.0 65,278 - -0.1 65,299 + -0.9 65,300 - +0.0 65,300 - +1.0 65,300 - -0.2 65,300 - -0.2 65,300 - +0.2 65,300 - -1.1 65,302 - -1.2 65,302 - -0.7 65,369 + -0.6 65,369 + -0.3 65,369 + -0.9 65,369 + -0.9 65,369 + -0.3 65,370 - +0.3 65,370 - -0.0 65,370 - +0.3 65,370 - -0.0 65,370 - +0.6 65,484 + +0.1 65,485 - +0.2 65,553 - -0.3 65,553 - -0.5 65,626 + +0.1 65,681 + -0.1 65,681 + -0.2 65,682 - +0.3 65,682 - +0.2 65,682 - -0.6 65,682 - -0.1 65,743 + -1.3 65,921 - -0.9
Or see this region's nucleotide sequence