Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20047 and SM_b20048 are separated by 168 nucleotides SM_b20048 and SM_b20049 are separated by 118 nucleotides SM_b20049 and SM_b20050 are separated by 143 nucleotides SM_b20050 and SM_b20054 are separated by 95 nucleotides
SM_b20047: SM_b20047 - hypothetical protein, at 59,127 to 59,315
_b20047
SM_b20048: SM_b20048 - transcriptional regulator, at 59,484 to 60,191
_b20048
SM_b20049: SM_b20049 - elongation factor G, at 60,310 to 62,271
_b20049
SM_b20050: SM_b20050 - hypothetical protein, at 62,415 to 62,924
_b20050
SM_b20054: SM_b20054 - non-heme chloroperoxidase, at 63,020 to 63,847
_b20054
Position (kb)
60
61
62
63 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.311 kb on - strand at 59.311 kb on - strand at 59.405 kb on + strand at 59.406 kb on - strand at 59.454 kb on + strand at 59.454 kb on + strand at 59.455 kb on - strand at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.757 kb on + strand, within SM_b20048 at 59.758 kb on - strand, within SM_b20048 at 59.764 kb on - strand, within SM_b20048 at 60.321 kb on + strand at 60.321 kb on + strand at 60.580 kb on + strand, within SM_b20049 at 60.581 kb on - strand, within SM_b20049 at 60.656 kb on + strand, within SM_b20049 at 60.940 kb on + strand, within SM_b20049 at 61.780 kb on + strand, within SM_b20049 at 61.780 kb on + strand, within SM_b20049 at 61.781 kb on - strand, within SM_b20049 at 61.903 kb on + strand, within SM_b20049 at 62.213 kb on - strand at 62.283 kb on + strand at 62.284 kb on - strand at 62.376 kb on + strand at 62.605 kb on + strand, within SM_b20050 at 62.606 kb on - strand, within SM_b20050 at 62.719 kb on - strand, within SM_b20050 at 62.977 kb on - strand at 62.999 kb on - strand at 62.999 kb on - strand at 62.999 kb on - strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.067 kb on - strand at 63.067 kb on - strand at 63.099 kb on + strand at 63.110 kb on + strand, within SM_b20054
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 59,310 + -0.8 59,310 + -1.3 59,310 + -1.0 59,310 + +0.1 59,310 + +1.6 59,311 - +0.3 59,311 - +1.3 59,405 + -0.9 59,406 - -1.1 59,454 + -1.1 59,454 + +0.1 59,455 - +0.5 59,677 - SM_b20048 0.27 -2.1 59,677 - SM_b20048 0.27 +0.3 59,677 - +1.0 59,677 - SM_b20048 0.27 -0.1 59,677 - SM_b20048 0.27 -1.1 59,677 - SM_b20048 0.27 -1.4 59,738 - SM_b20048 0.36 -3.0 59,738 - SM_b20048 0.36 -0.1 59,738 - SM_b20048 0.36 +1.9 59,738 - SM_b20048 0.36 -0.8 59,738 - SM_b20048 0.36 -0.0 59,738 - SM_b20048 0.36 +0.2 59,757 + SM_b20048 0.39 +0.6 59,758 - SM_b20048 0.39 +0.8 59,764 - SM_b20048 0.40 +0.1 60,321 + +0.1 60,321 + +0.9 60,580 + SM_b20049 0.14 -0.1 60,581 - SM_b20049 0.14 +0.1 60,656 + SM_b20049 0.18 +0.1 60,940 + SM_b20049 0.32 +0.1 61,780 + SM_b20049 0.75 +0.2 61,780 + SM_b20049 0.75 -0.5 61,781 - SM_b20049 0.75 +1.1 61,903 + SM_b20049 0.81 -0.0 62,213 - -0.1 62,283 + -0.1 62,284 - +1.4 62,376 + -0.4 62,605 + SM_b20050 0.37 -0.4 62,606 - SM_b20050 0.37 -0.0 62,719 - SM_b20050 0.60 -0.5 62,977 - -0.1 62,999 - +0.6 62,999 - +0.0 62,999 - -1.1 63,066 + +0.7 63,066 + +0.3 63,066 + -2.6 63,066 + +1.8 63,067 - -0.3 63,067 - +0.7 63,099 + -0.3 63,110 + SM_b20054 0.11 -0.1
Or see this region's nucleotide sequence