Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20028

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20027 and SM_b20028 are separated by 63 nucleotidesSM_b20028 and SM_b20029 are separated by 439 nucleotidesSM_b20029 and SM_b20030 overlap by 1 nucleotides SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310 _b20027 SM_b20028: SM_b20028 - hypothetical protein, at 39,374 to 40,510 _b20028 SM_b20029: SM_b20029 - hypothetical protein, at 40,950 to 41,423 _b20029 SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280 _b20030 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.403 kb on - strand, within SM_b20027at 38.598 kb on + strand, within SM_b20027at 38.599 kb on - strand, within SM_b20027at 38.640 kb on - strand, within SM_b20027at 38.967 kb on - strand, within SM_b20027at 39.014 kb on + strand, within SM_b20027at 39.035 kb on + strand, within SM_b20027at 39.036 kb on - strand, within SM_b20027at 39.036 kb on - strand, within SM_b20027at 39.036 kb on - strand, within SM_b20027at 39.044 kb on + strand, within SM_b20027at 39.044 kb on + strand, within SM_b20027at 39.360 kb on + strandat 39.360 kb on + strandat 39.405 kb on - strandat 39.451 kb on + strandat 39.452 kb on - strandat 39.452 kb on - strandat 39.452 kb on - strandat 39.453 kb on + strandat 39.453 kb on + strandat 39.453 kb on + strandat 39.453 kb on + strandat 39.454 kb on - strandat 39.454 kb on - strandat 39.454 kb on - strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.459 kb on - strandat 39.459 kb on - strandat 39.459 kb on - strandat 39.492 kb on + strand, within SM_b20028at 39.493 kb on - strand, within SM_b20028at 39.522 kb on + strand, within SM_b20028at 39.523 kb on - strand, within SM_b20028at 39.671 kb on - strand, within SM_b20028at 39.701 kb on + strand, within SM_b20028at 39.702 kb on - strand, within SM_b20028at 39.711 kb on + strand, within SM_b20028at 39.711 kb on + strand, within SM_b20028at 39.712 kb on - strand, within SM_b20028at 39.712 kb on - strand, within SM_b20028at 39.731 kb on + strand, within SM_b20028at 39.731 kb on + strand, within SM_b20028at 39.731 kb on + strand, within SM_b20028at 39.731 kb on + strand, within SM_b20028at 39.761 kb on + strand, within SM_b20028at 39.771 kb on - strand, within SM_b20028at 39.817 kb on - strand, within SM_b20028at 39.817 kb on - strand, within SM_b20028at 39.874 kb on + strand, within SM_b20028at 39.875 kb on - strand, within SM_b20028at 39.953 kb on + strand, within SM_b20028at 39.953 kb on + strand, within SM_b20028at 40.020 kb on - strand, within SM_b20028at 40.020 kb on - strand, within SM_b20028at 40.068 kb on + strand, within SM_b20028at 40.069 kb on - strand, within SM_b20028at 40.150 kb on - strand, within SM_b20028at 40.173 kb on + strand, within SM_b20028at 40.173 kb on + strand, within SM_b20028at 40.174 kb on - strand, within SM_b20028at 40.239 kb on + strand, within SM_b20028at 40.345 kb on + strand, within SM_b20028at 40.346 kb on - strand, within SM_b20028at 40.347 kb on + strand, within SM_b20028at 40.347 kb on + strand, within SM_b20028at 40.347 kb on + strand, within SM_b20028at 40.347 kb on + strand, within SM_b20028at 40.348 kb on - strand, within SM_b20028at 40.510 kb on + strandat 40.510 kb on + strandat 40.510 kb on + strandat 40.510 kb on + strandat 40.511 kb on - strandat 40.511 kb on - strandat 40.511 kb on - strandat 40.511 kb on - strandat 40.511 kb on - strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.514 kb on + strandat 40.515 kb on - strandat 40.515 kb on - strandat 40.528 kb on + strandat 40.547 kb on + strandat 40.547 kb on + strandat 40.548 kb on - strandat 40.548 kb on - strandat 40.565 kb on + strandat 40.565 kb on + strandat 40.566 kb on - strandat 40.597 kb on + strandat 40.598 kb on - strandat 40.598 kb on - strandat 40.801 kb on + strandat 40.801 kb on + strandat 40.801 kb on + strandat 40.801 kb on + strandat 40.801 kb on + strandat 40.802 kb on - strandat 40.802 kb on - strandat 40.802 kb on - strandat 40.802 kb on - strandat 40.802 kb on - strandat 41.048 kb on + strand, within SM_b20029at 41.154 kb on + strand, within SM_b20029at 41.154 kb on + strand, within SM_b20029at 41.155 kb on - strand, within SM_b20029at 41.155 kb on - strand, within SM_b20029at 41.188 kb on - strand, within SM_b20029at 41.268 kb on + strand, within SM_b20029at 41.330 kb on + strand, within SM_b20029

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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38,403 - SM_b20027 0.40 +0.1
38,598 + SM_b20027 0.53 +0.7
38,599 - SM_b20027 0.53 -0.1
38,640 - SM_b20027 0.55 -0.6
38,967 - SM_b20027 0.77 -0.5
39,014 + SM_b20027 0.80 -1.3
39,035 + SM_b20027 0.82 +0.4
39,036 - SM_b20027 0.82 +0.0
39,036 - SM_b20027 0.82 -0.5
39,036 - SM_b20027 0.82 -0.7
39,044 + SM_b20027 0.82 +0.3
39,044 + SM_b20027 0.82 +0.9
39,360 + -1.0
39,360 + -2.1
39,405 - -0.3
39,451 + -0.1
39,452 - +0.1
39,452 - +0.1
39,452 - -1.3
39,453 + -1.3
39,453 + -0.0
39,453 + +0.3
39,453 + +0.7
39,454 - +0.8
39,454 - -0.4
39,454 - -0.6
39,458 + +0.8
39,458 + -0.3
39,458 + +0.6
39,458 + -0.1
39,458 + -0.5
39,458 + +0.1
39,459 - +1.2
39,459 - +0.0
39,459 - -0.4
39,492 + SM_b20028 0.10 +0.3
39,493 - SM_b20028 0.10 +0.2
39,522 + SM_b20028 0.13 -0.5
39,523 - SM_b20028 0.13 -0.1
39,671 - SM_b20028 0.26 -0.0
39,701 + SM_b20028 0.29 +0.8
39,702 - SM_b20028 0.29 +0.1
39,711 + SM_b20028 0.30 +0.3
39,711 + SM_b20028 0.30 +0.7
39,712 - SM_b20028 0.30 -0.3
39,712 - SM_b20028 0.30 +1.7
39,731 + SM_b20028 0.31 +1.5
39,731 + SM_b20028 0.31 +0.1
39,731 + SM_b20028 0.31 +0.8
39,731 + SM_b20028 0.31 +0.1
39,761 + SM_b20028 0.34 +0.6
39,771 - SM_b20028 0.35 +1.2
39,817 - SM_b20028 0.39 +0.8
39,817 - SM_b20028 0.39 -1.1
39,874 + SM_b20028 0.44 -1.1
39,875 - SM_b20028 0.44 +0.9
39,953 + SM_b20028 0.51 +0.9
39,953 + SM_b20028 0.51 -0.3
40,020 - SM_b20028 0.57 -0.4
40,020 - SM_b20028 0.57 -0.6
40,068 + SM_b20028 0.61 +0.9
40,069 - SM_b20028 0.61 -0.4
40,150 - SM_b20028 0.68 -1.0
40,173 + SM_b20028 0.70 +0.3
40,173 + SM_b20028 0.70 -0.3
40,174 - SM_b20028 0.70 +0.5
40,239 + SM_b20028 0.76 -1.0
40,345 + SM_b20028 0.85 -2.4
40,346 - SM_b20028 0.85 +0.8
40,347 + SM_b20028 0.86 +0.7
40,347 + SM_b20028 0.86 -0.4
40,347 + SM_b20028 0.86 +0.8
40,347 + SM_b20028 0.86 -0.6
40,348 - SM_b20028 0.86 -0.7
40,510 + -0.8
40,510 + +0.0
40,510 + +1.3
40,510 + -0.0
40,511 - -0.5
40,511 - -1.4
40,511 - +0.2
40,511 - -1.2
40,511 - -0.3
40,512 + +0.5
40,512 + -0.3
40,512 + -0.0
40,512 + -0.5
40,512 + +0.5
40,512 + -0.2
40,512 + +0.0
40,513 - +0.7
40,513 - +1.4
40,513 - +0.1
40,513 - -1.1
40,513 - +0.1
40,513 - -0.3
40,514 + -0.7
40,515 - -0.5
40,515 - -2.0
40,528 + +0.1
40,547 + +1.3
40,547 + -0.8
40,548 - +0.7
40,548 - -0.0
40,565 + +0.6
40,565 + +0.6
40,566 - -0.2
40,597 + -1.0
40,598 - +0.5
40,598 - +0.3
40,801 + -2.7
40,801 + +0.7
40,801 + +0.6
40,801 + +0.5
40,801 + -0.3
40,802 - -1.5
40,802 - -0.2
40,802 - -0.1
40,802 - +0.8
40,802 - +2.0
41,048 + SM_b20029 0.21 -1.2
41,154 + SM_b20029 0.43 -0.0
41,154 + SM_b20029 0.43 +0.3
41,155 - SM_b20029 0.43 +0.4
41,155 - SM_b20029 0.43 +0.7
41,188 - SM_b20029 0.50 +0.9
41,268 + SM_b20029 0.67 -1.8
41,330 + SM_b20029 0.80 +3.0

Or see this region's nucleotide sequence