Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27095 and RR42_RS27100 are separated by 77 nucleotides RR42_RS27100 and RR42_RS27105 are separated by 440 nucleotides RR42_RS27105 and RR42_RS27110 are separated by 45 nucleotides
RR42_RS27095: RR42_RS27095 - hypothetical protein, at 1,431,826 to 1,432,677
_RS27095
RR42_RS27100: RR42_RS27100 - hypothetical protein, at 1,432,755 to 1,434,686
_RS27100
RR42_RS27105: RR42_RS27105 - hypothetical protein, at 1,435,127 to 1,435,360
_RS27105
RR42_RS27110: RR42_RS27110 - hypothetical protein, at 1,435,406 to 1,435,720
_RS27110
Position (kb)
1432
1433
1434
1435 Strain fitness (log2 ratio)
-1
0
1 at 1432.151 kb on + strand, within RR42_RS27095 at 1432.447 kb on + strand, within RR42_RS27095 at 1432.693 kb on + strand at 1432.839 kb on + strand at 1433.231 kb on + strand, within RR42_RS27100 at 1433.282 kb on - strand, within RR42_RS27100 at 1433.282 kb on - strand, within RR42_RS27100 at 1433.282 kb on - strand, within RR42_RS27100 at 1433.282 kb on - strand, within RR42_RS27100 at 1434.039 kb on - strand, within RR42_RS27100 at 1434.316 kb on - strand, within RR42_RS27100 at 1434.316 kb on - strand, within RR42_RS27100 at 1434.880 kb on - strand at 1434.894 kb on - strand at 1434.938 kb on + strand at 1434.939 kb on - strand at 1435.060 kb on + strand at 1435.061 kb on - strand at 1435.139 kb on + strand at 1435.218 kb on + strand, within RR42_RS27105 at 1435.377 kb on + strand at 1435.377 kb on + strand at 1435.378 kb on - strand at 1435.521 kb on + strand, within RR42_RS27110 at 1435.522 kb on - strand, within RR42_RS27110 at 1435.522 kb on - strand, within RR42_RS27110 at 1435.522 kb on - strand, within RR42_RS27110
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,432,151 + RR42_RS27095 0.38 +1.2 1,432,447 + RR42_RS27095 0.73 -0.6 1,432,693 + +0.2 1,432,839 + +0.7 1,433,231 + RR42_RS27100 0.25 +0.8 1,433,282 - RR42_RS27100 0.27 +1.5 1,433,282 - RR42_RS27100 0.27 +0.1 1,433,282 - RR42_RS27100 0.27 +0.2 1,433,282 - RR42_RS27100 0.27 +0.8 1,434,039 - RR42_RS27100 0.66 -0.1 1,434,316 - RR42_RS27100 0.81 +0.2 1,434,316 - RR42_RS27100 0.81 +0.5 1,434,880 - -0.2 1,434,894 - -0.0 1,434,938 + -0.1 1,434,939 - +1.0 1,435,060 + +0.1 1,435,061 - +0.1 1,435,139 + -0.6 1,435,218 + RR42_RS27105 0.39 -0.2 1,435,377 + -0.4 1,435,377 + +0.5 1,435,378 - -0.6 1,435,521 + RR42_RS27110 0.37 +0.3 1,435,522 - RR42_RS27110 0.37 +0.2 1,435,522 - RR42_RS27110 0.37 -0.0 1,435,522 - RR42_RS27110 0.37 +0.1
Or see this region's nucleotide sequence