Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22140 and RR42_RS22145 overlap by 4 nucleotides RR42_RS22145 and RR42_RS22150 are separated by 37 nucleotides RR42_RS22150 and RR42_RS22155 are separated by 7 nucleotides RR42_RS22155 and RR42_RS22160 overlap by 4 nucleotides
RR42_RS22140: RR42_RS22140 - cytochrome C, at 307,457 to 307,912
_RS22140
RR42_RS22145: RR42_RS22145 - amine dehydrogenase, at 307,909 to 308,430
_RS22145
RR42_RS22150: RR42_RS22150 - thiol-disulfide isomerase, at 308,468 to 309,055
_RS22150
RR42_RS22155: RR42_RS22155 - hypothetical protein, at 309,063 to 309,686
_RS22155
RR42_RS22160: RR42_RS22160 - amine dehydrogenase, at 309,683 to 310,828
_RS22160
Position (kb) 308
309
310 Strain fitness (log2 ratio) -1
0
1 at 308.079 kb on - strand, within RR42_RS22145 at 308.090 kb on + strand, within RR42_RS22145 at 308.216 kb on + strand, within RR42_RS22145 at 308.216 kb on + strand, within RR42_RS22145 at 308.217 kb on - strand, within RR42_RS22145 at 308.510 kb on - strand at 308.655 kb on + strand, within RR42_RS22150 at 308.988 kb on + strand, within RR42_RS22150 at 308.988 kb on + strand, within RR42_RS22150 at 309.031 kb on + strand at 309.084 kb on - strand at 309.801 kb on + strand, within RR42_RS22160 at 309.801 kb on + strand, within RR42_RS22160 at 309.802 kb on - strand, within RR42_RS22160 at 309.802 kb on - strand, within RR42_RS22160 at 309.802 kb on - strand, within RR42_RS22160 at 309.802 kb on - strand at 309.957 kb on + strand, within RR42_RS22160 at 309.958 kb on - strand, within RR42_RS22160
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 308,079 - RR42_RS22145 0.33 -0.9 308,090 + RR42_RS22145 0.35 +1.0 308,216 + RR42_RS22145 0.59 -0.5 308,216 + RR42_RS22145 0.59 -1.6 308,217 - RR42_RS22145 0.59 +0.3 308,510 - +0.5 308,655 + RR42_RS22150 0.32 -0.6 308,988 + RR42_RS22150 0.88 -1.3 308,988 + RR42_RS22150 0.88 -0.9 309,031 + -0.2 309,084 - -0.2 309,801 + RR42_RS22160 0.10 +0.6 309,801 + RR42_RS22160 0.10 +0.3 309,802 - RR42_RS22160 0.10 -0.6 309,802 - RR42_RS22160 0.10 +0.0 309,802 - RR42_RS22160 0.10 -0.5 309,802 - +1.0 309,957 + RR42_RS22160 0.24 +0.4 309,958 - RR42_RS22160 0.24 -0.2
Or see this region's nucleotide sequence