Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11520

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11515 and RR42_RS11520 overlap by 4 nucleotidesRR42_RS11520 and RR42_RS11525 overlap by 1 nucleotides RR42_RS11510: RR42_RS11510 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,461,079 to 2,462,260 _RS11510 RR42_RS11515: RR42_RS11515 - hypothetical protein, at 2,462,253 to 2,463,263 _RS11515 RR42_RS11520: RR42_RS11520 - ABC transporter ATP-binding protein, at 2,463,260 to 2,464,048 _RS11520 RR42_RS11525: RR42_RS11525 - hypothetical protein, at 2,464,048 to 2,465,043 _RS11525 Position (kb) 2463 2464 2465Strain fitness (log2 ratio) -2 -1 0 1 2at 2462.365 kb on + strand, within RR42_RS11515at 2462.366 kb on - strand, within RR42_RS11515at 2462.366 kb on - strand, within RR42_RS11515at 2462.425 kb on + strand, within RR42_RS11515at 2462.425 kb on + strand, within RR42_RS11515at 2462.426 kb on - strand, within RR42_RS11515at 2462.426 kb on - strand, within RR42_RS11515at 2462.426 kb on - strand, within RR42_RS11515at 2462.489 kb on + strand, within RR42_RS11515at 2462.491 kb on + strand, within RR42_RS11515at 2462.491 kb on + strand, within RR42_RS11515at 2462.491 kb on + strand, within RR42_RS11515at 2462.492 kb on - strand, within RR42_RS11515at 2462.492 kb on - strand, within RR42_RS11515at 2462.492 kb on - strand, within RR42_RS11515at 2462.492 kb on - strand, within RR42_RS11515at 2462.699 kb on + strand, within RR42_RS11515at 2462.767 kb on + strand, within RR42_RS11515at 2462.767 kb on + strand, within RR42_RS11515at 2462.767 kb on + strand, within RR42_RS11515at 2462.768 kb on - strand, within RR42_RS11515at 2462.768 kb on - strand, within RR42_RS11515at 2462.768 kb on - strand, within RR42_RS11515at 2462.768 kb on - strand, within RR42_RS11515at 2462.893 kb on + strand, within RR42_RS11515at 2463.019 kb on + strand, within RR42_RS11515at 2463.019 kb on + strand, within RR42_RS11515at 2463.019 kb on + strand, within RR42_RS11515at 2463.109 kb on + strand, within RR42_RS11515at 2463.110 kb on - strand, within RR42_RS11515at 2463.835 kb on + strand, within RR42_RS11520at 2463.836 kb on - strand, within RR42_RS11520at 2464.124 kb on + strandat 2464.152 kb on - strand, within RR42_RS11525at 2464.202 kb on + strand, within RR42_RS11525at 2464.203 kb on - strand, within RR42_RS11525at 2464.733 kb on + strand, within RR42_RS11525at 2464.764 kb on - strand, within RR42_RS11525at 2464.890 kb on + strand, within RR42_RS11525at 2464.890 kb on + strand, within RR42_RS11525

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,462,365 + RR42_RS11515 0.11 +1.2
2,462,366 - RR42_RS11515 0.11 +1.0
2,462,366 - RR42_RS11515 0.11 -0.3
2,462,425 + RR42_RS11515 0.17 +1.0
2,462,425 + RR42_RS11515 0.17 -0.4
2,462,426 - RR42_RS11515 0.17 -0.1
2,462,426 - RR42_RS11515 0.17 -1.8
2,462,426 - RR42_RS11515 0.17 +0.0
2,462,489 + RR42_RS11515 0.23 -2.3
2,462,491 + RR42_RS11515 0.24 -0.3
2,462,491 + RR42_RS11515 0.24 +0.6
2,462,491 + RR42_RS11515 0.24 -0.1
2,462,492 - RR42_RS11515 0.24 -0.6
2,462,492 - RR42_RS11515 0.24 -0.3
2,462,492 - RR42_RS11515 0.24 +1.1
2,462,492 - RR42_RS11515 0.24 +0.8
2,462,699 + RR42_RS11515 0.44 +0.6
2,462,767 + RR42_RS11515 0.51 -0.4
2,462,767 + RR42_RS11515 0.51 -0.5
2,462,767 + RR42_RS11515 0.51 -0.4
2,462,768 - RR42_RS11515 0.51 +0.7
2,462,768 - RR42_RS11515 0.51 -0.1
2,462,768 - RR42_RS11515 0.51 +0.0
2,462,768 - RR42_RS11515 0.51 +0.0
2,462,893 + RR42_RS11515 0.63 +2.1
2,463,019 + RR42_RS11515 0.76 -0.1
2,463,019 + RR42_RS11515 0.76 -0.2
2,463,019 + RR42_RS11515 0.76 -2.1
2,463,109 + RR42_RS11515 0.85 -0.6
2,463,110 - RR42_RS11515 0.85 -0.1
2,463,835 + RR42_RS11520 0.73 -1.1
2,463,836 - RR42_RS11520 0.73 -0.7
2,464,124 + +0.4
2,464,152 - RR42_RS11525 0.10 -0.5
2,464,202 + RR42_RS11525 0.15 -0.3
2,464,203 - RR42_RS11525 0.16 -0.8
2,464,733 + RR42_RS11525 0.69 -0.2
2,464,764 - RR42_RS11525 0.72 -0.2
2,464,890 + RR42_RS11525 0.85 -0.1
2,464,890 + RR42_RS11525 0.85 +0.0

Or see this region's nucleotide sequence