Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11515 and RR42_RS11520 overlap by 4 nucleotides RR42_RS11520 and RR42_RS11525 overlap by 1 nucleotides
RR42_RS11510: RR42_RS11510 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,461,079 to 2,462,260
_RS11510
RR42_RS11515: RR42_RS11515 - hypothetical protein, at 2,462,253 to 2,463,263
_RS11515
RR42_RS11520: RR42_RS11520 - ABC transporter ATP-binding protein, at 2,463,260 to 2,464,048
_RS11520
RR42_RS11525: RR42_RS11525 - hypothetical protein, at 2,464,048 to 2,465,043
_RS11525
Position (kb)
2463
2464
2465 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2462.365 kb on + strand, within RR42_RS11515 at 2462.366 kb on - strand, within RR42_RS11515 at 2462.366 kb on - strand, within RR42_RS11515 at 2462.425 kb on + strand, within RR42_RS11515 at 2462.425 kb on + strand, within RR42_RS11515 at 2462.426 kb on - strand, within RR42_RS11515 at 2462.426 kb on - strand, within RR42_RS11515 at 2462.426 kb on - strand, within RR42_RS11515 at 2462.489 kb on + strand, within RR42_RS11515 at 2462.491 kb on + strand, within RR42_RS11515 at 2462.491 kb on + strand, within RR42_RS11515 at 2462.491 kb on + strand, within RR42_RS11515 at 2462.492 kb on - strand, within RR42_RS11515 at 2462.492 kb on - strand, within RR42_RS11515 at 2462.492 kb on - strand, within RR42_RS11515 at 2462.492 kb on - strand, within RR42_RS11515 at 2462.699 kb on + strand, within RR42_RS11515 at 2462.767 kb on + strand, within RR42_RS11515 at 2462.767 kb on + strand, within RR42_RS11515 at 2462.767 kb on + strand, within RR42_RS11515 at 2462.768 kb on - strand, within RR42_RS11515 at 2462.768 kb on - strand, within RR42_RS11515 at 2462.768 kb on - strand, within RR42_RS11515 at 2462.768 kb on - strand, within RR42_RS11515 at 2462.893 kb on + strand, within RR42_RS11515 at 2463.019 kb on + strand, within RR42_RS11515 at 2463.019 kb on + strand, within RR42_RS11515 at 2463.019 kb on + strand, within RR42_RS11515 at 2463.109 kb on + strand, within RR42_RS11515 at 2463.110 kb on - strand, within RR42_RS11515 at 2463.835 kb on + strand, within RR42_RS11520 at 2463.836 kb on - strand, within RR42_RS11520 at 2464.124 kb on + strand at 2464.152 kb on - strand, within RR42_RS11525 at 2464.202 kb on + strand, within RR42_RS11525 at 2464.203 kb on - strand, within RR42_RS11525 at 2464.733 kb on + strand, within RR42_RS11525 at 2464.764 kb on - strand, within RR42_RS11525 at 2464.890 kb on + strand, within RR42_RS11525 at 2464.890 kb on + strand, within RR42_RS11525
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 2,462,365 + RR42_RS11515 0.11 +1.2 2,462,366 - RR42_RS11515 0.11 +1.0 2,462,366 - RR42_RS11515 0.11 -0.3 2,462,425 + RR42_RS11515 0.17 +1.0 2,462,425 + RR42_RS11515 0.17 -0.4 2,462,426 - RR42_RS11515 0.17 -0.1 2,462,426 - RR42_RS11515 0.17 -1.8 2,462,426 - RR42_RS11515 0.17 +0.0 2,462,489 + RR42_RS11515 0.23 -2.3 2,462,491 + RR42_RS11515 0.24 -0.3 2,462,491 + RR42_RS11515 0.24 +0.6 2,462,491 + RR42_RS11515 0.24 -0.1 2,462,492 - RR42_RS11515 0.24 -0.6 2,462,492 - RR42_RS11515 0.24 -0.3 2,462,492 - RR42_RS11515 0.24 +1.1 2,462,492 - RR42_RS11515 0.24 +0.8 2,462,699 + RR42_RS11515 0.44 +0.6 2,462,767 + RR42_RS11515 0.51 -0.4 2,462,767 + RR42_RS11515 0.51 -0.5 2,462,767 + RR42_RS11515 0.51 -0.4 2,462,768 - RR42_RS11515 0.51 +0.7 2,462,768 - RR42_RS11515 0.51 -0.1 2,462,768 - RR42_RS11515 0.51 +0.0 2,462,768 - RR42_RS11515 0.51 +0.0 2,462,893 + RR42_RS11515 0.63 +2.1 2,463,019 + RR42_RS11515 0.76 -0.1 2,463,019 + RR42_RS11515 0.76 -0.2 2,463,019 + RR42_RS11515 0.76 -2.1 2,463,109 + RR42_RS11515 0.85 -0.6 2,463,110 - RR42_RS11515 0.85 -0.1 2,463,835 + RR42_RS11520 0.73 -1.1 2,463,836 - RR42_RS11520 0.73 -0.7 2,464,124 + +0.4 2,464,152 - RR42_RS11525 0.10 -0.5 2,464,202 + RR42_RS11525 0.15 -0.3 2,464,203 - RR42_RS11525 0.16 -0.8 2,464,733 + RR42_RS11525 0.69 -0.2 2,464,764 - RR42_RS11525 0.72 -0.2 2,464,890 + RR42_RS11525 0.85 -0.1 2,464,890 + RR42_RS11525 0.85 +0.0
Or see this region's nucleotide sequence