Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08765 and RR42_RS08770 are separated by 312 nucleotides RR42_RS08770 and RR42_RS08775 are separated by 396 nucleotides
RR42_RS08765: RR42_RS08765 - histidine kinase, at 1,835,959 to 1,837,890
_RS08765
RR42_RS08770: RR42_RS08770 - 2-nitropropane dioxygenase, at 1,838,203 to 1,839,384
_RS08770
RR42_RS08775: RR42_RS08775 - protease, at 1,839,781 to 1,840,734
_RS08775
Position (kb)
1838
1839
1840 Strain fitness (log2 ratio)
-1
0
1
2 at 1837.310 kb on + strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.981 kb on + strand at 1837.981 kb on + strand at 1837.981 kb on + strand at 1837.982 kb on - strand at 1837.986 kb on + strand at 1837.987 kb on - strand at 1838.133 kb on + strand at 1838.133 kb on + strand at 1838.508 kb on - strand, within RR42_RS08770 at 1839.334 kb on + strand at 1839.384 kb on + strand at 1839.385 kb on - strand at 1839.396 kb on + strand at 1839.447 kb on + strand at 1839.448 kb on - strand at 1839.518 kb on - strand at 1839.518 kb on - strand at 1839.657 kb on + strand at 1839.811 kb on + strand at 1839.936 kb on + strand, within RR42_RS08775 at 1839.937 kb on - strand, within RR42_RS08775 at 1839.937 kb on - strand, within RR42_RS08775 at 1839.937 kb on - strand, within RR42_RS08775 at 1840.143 kb on - strand, within RR42_RS08775 at 1840.279 kb on + strand, within RR42_RS08775
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,837,310 + RR42_RS08765 0.70 +0.0 1,837,311 - RR42_RS08765 0.70 +0.3 1,837,311 - RR42_RS08765 0.70 -0.2 1,837,311 - RR42_RS08765 0.70 -0.9 1,837,981 + -0.5 1,837,981 + -1.5 1,837,981 + +0.6 1,837,982 - +0.3 1,837,986 + +0.7 1,837,987 - -0.3 1,838,133 + -1.0 1,838,133 + +1.2 1,838,508 - RR42_RS08770 0.26 +1.2 1,839,334 + -0.2 1,839,384 + -0.4 1,839,385 - -0.0 1,839,396 + -0.1 1,839,447 + +0.1 1,839,448 - +2.1 1,839,518 - +0.2 1,839,518 - +0.6 1,839,657 + -0.3 1,839,811 + +1.5 1,839,936 + RR42_RS08775 0.16 -0.1 1,839,937 - RR42_RS08775 0.16 -0.5 1,839,937 - RR42_RS08775 0.16 +0.5 1,839,937 - RR42_RS08775 0.16 -0.5 1,840,143 - RR42_RS08775 0.38 -1.2 1,840,279 + RR42_RS08775 0.52 -1.0
Or see this region's nucleotide sequence