Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05670

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05660 and RR42_RS05665 are separated by 44 nucleotidesRR42_RS05665 and RR42_RS05670 are separated by 28 nucleotidesRR42_RS05670 and RR42_RS05675 overlap by 1 nucleotides RR42_RS05660: RR42_RS05660 - urease subunit gamma, at 1,246,584 to 1,246,886 _RS05660 RR42_RS05665: RR42_RS05665 - urease accessory protein UreJ, at 1,246,931 to 1,247,563 _RS05665 RR42_RS05670: RR42_RS05670 - urease subunit beta, at 1,247,592 to 1,247,897 _RS05670 RR42_RS05675: RR42_RS05675 - urease subunit alpha, at 1,247,897 to 1,249,615 _RS05675 Position (kb) 1247 1248Strain fitness (log2 ratio) -1 0 1at 1247.418 kb on - strand, within RR42_RS05665at 1247.778 kb on - strand, within RR42_RS05670at 1247.863 kb on - strand, within RR42_RS05670at 1248.643 kb on + strand, within RR42_RS05675at 1248.643 kb on + strand, within RR42_RS05675at 1248.706 kb on + strand, within RR42_RS05675at 1248.706 kb on + strand, within RR42_RS05675at 1248.706 kb on + strand, within RR42_RS05675at 1248.707 kb on - strand, within RR42_RS05675at 1248.710 kb on + strand, within RR42_RS05675at 1248.711 kb on - strand, within RR42_RS05675at 1248.759 kb on + strand, within RR42_RS05675at 1248.809 kb on + strand, within RR42_RS05675at 1248.810 kb on - strand, within RR42_RS05675at 1248.810 kb on - strand, within RR42_RS05675at 1248.810 kb on - strand, within RR42_RS05675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,247,418 - RR42_RS05665 0.77 -0.8
1,247,778 - RR42_RS05670 0.61 -0.7
1,247,863 - RR42_RS05670 0.89 -1.3
1,248,643 + RR42_RS05675 0.43 +0.8
1,248,643 + RR42_RS05675 0.43 +0.5
1,248,706 + RR42_RS05675 0.47 -0.9
1,248,706 + RR42_RS05675 0.47 +0.1
1,248,706 + RR42_RS05675 0.47 -0.9
1,248,707 - RR42_RS05675 0.47 -1.1
1,248,710 + RR42_RS05675 0.47 +0.5
1,248,711 - RR42_RS05675 0.47 +0.2
1,248,759 + RR42_RS05675 0.50 +1.4
1,248,809 + RR42_RS05675 0.53 -0.3
1,248,810 - RR42_RS05675 0.53 +0.9
1,248,810 - RR42_RS05675 0.53 +0.9
1,248,810 - RR42_RS05675 0.53 +0.8

Or see this region's nucleotide sequence