Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03355

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03345 and RR42_RS03350 are separated by 125 nucleotidesRR42_RS03350 and RR42_RS03355 are separated by 245 nucleotidesRR42_RS03355 and RR42_RS03360 are separated by 64 nucleotides RR42_RS03345: RR42_RS03345 - recombinase XerD, at 743,542 to 744,462 _RS03345 RR42_RS03350: RR42_RS03350 - cysteine methyltransferase, at 744,588 to 745,067 _RS03350 RR42_RS03355: RR42_RS03355 - N-acylmannosamine kinase, at 745,313 to 746,572 _RS03355 RR42_RS03360: RR42_RS03360 - fructose ABC transporter, ATPase component (FrcA) (from data), at 746,637 to 748,250 _RS03360 Position (kb) 745 746 747Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 744.790 kb on + strand, within RR42_RS03350at 744.790 kb on + strand, within RR42_RS03350at 744.790 kb on + strand, within RR42_RS03350at 744.791 kb on - strand, within RR42_RS03350at 744.901 kb on + strand, within RR42_RS03350at 744.901 kb on + strand, within RR42_RS03350at 744.902 kb on - strand, within RR42_RS03350at 744.904 kb on + strand, within RR42_RS03350at 744.905 kb on - strand, within RR42_RS03350at 744.905 kb on - strandat 744.905 kb on - strand, within RR42_RS03350at 744.980 kb on - strand, within RR42_RS03350at 744.980 kb on - strand, within RR42_RS03350at 745.099 kb on - strandat 745.232 kb on + strandat 745.244 kb on + strandat 745.293 kb on + strandat 745.293 kb on + strandat 745.293 kb on + strandat 745.294 kb on - strandat 745.364 kb on + strandat 745.784 kb on + strand, within RR42_RS03355at 745.784 kb on + strand, within RR42_RS03355at 745.785 kb on - strand, within RR42_RS03355at 745.952 kb on + strand, within RR42_RS03355at 745.982 kb on + strand, within RR42_RS03355at 745.982 kb on + strand, within RR42_RS03355at 745.982 kb on + strand, within RR42_RS03355at 745.982 kb on + strand, within RR42_RS03355at 745.983 kb on - strand, within RR42_RS03355at 745.983 kb on - strand, within RR42_RS03355at 746.180 kb on + strand, within RR42_RS03355at 746.627 kb on + strandat 746.681 kb on + strandat 746.736 kb on + strandat 746.814 kb on + strand, within RR42_RS03360at 746.815 kb on - strand, within RR42_RS03360at 746.816 kb on + strand, within RR42_RS03360at 746.910 kb on + strand, within RR42_RS03360at 747.240 kb on + strand, within RR42_RS03360at 747.240 kb on + strand, within RR42_RS03360at 747.240 kb on + strand, within RR42_RS03360at 747.241 kb on - strand, within RR42_RS03360at 747.241 kb on - strand, within RR42_RS03360at 747.241 kb on - strand, within RR42_RS03360at 747.242 kb on + strand, within RR42_RS03360at 747.390 kb on + strand, within RR42_RS03360at 747.390 kb on + strand, within RR42_RS03360at 747.390 kb on + strand, within RR42_RS03360

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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744,790 + RR42_RS03350 0.42 -0.3
744,790 + RR42_RS03350 0.42 -0.2
744,790 + RR42_RS03350 0.42 +1.6
744,791 - RR42_RS03350 0.42 +0.0
744,901 + RR42_RS03350 0.65 +0.7
744,901 + RR42_RS03350 0.65 +0.9
744,902 - RR42_RS03350 0.65 +0.4
744,904 + RR42_RS03350 0.66 -0.0
744,905 - RR42_RS03350 0.66 +0.1
744,905 - +1.7
744,905 - RR42_RS03350 0.66 -1.1
744,980 - RR42_RS03350 0.82 -2.4
744,980 - RR42_RS03350 0.82 -0.5
745,099 - -0.6
745,232 + -1.3
745,244 + -0.9
745,293 + -1.3
745,293 + -1.4
745,293 + -0.2
745,294 - -0.8
745,364 + -2.5
745,784 + RR42_RS03355 0.37 -2.9
745,784 + RR42_RS03355 0.37 -1.6
745,785 - RR42_RS03355 0.37 -1.4
745,952 + RR42_RS03355 0.51 -2.1
745,982 + RR42_RS03355 0.53 -1.3
745,982 + RR42_RS03355 0.53 -1.5
745,982 + RR42_RS03355 0.53 -1.9
745,982 + RR42_RS03355 0.53 -0.7
745,983 - RR42_RS03355 0.53 -2.0
745,983 - RR42_RS03355 0.53 -1.6
746,180 + RR42_RS03355 0.69 -1.7
746,627 + -2.1
746,681 + -1.1
746,736 + -3.8
746,814 + RR42_RS03360 0.11 -2.5
746,815 - RR42_RS03360 0.11 -1.8
746,816 + RR42_RS03360 0.11 -3.2
746,910 + RR42_RS03360 0.17 -3.0
747,240 + RR42_RS03360 0.37 -2.3
747,240 + RR42_RS03360 0.37 -2.2
747,240 + RR42_RS03360 0.37 -2.2
747,241 - RR42_RS03360 0.37 -1.2
747,241 - RR42_RS03360 0.37 -2.5
747,241 - RR42_RS03360 0.37 -1.6
747,242 + RR42_RS03360 0.37 -3.5
747,390 + RR42_RS03360 0.47 -2.2
747,390 + RR42_RS03360 0.47 -1.5
747,390 + RR42_RS03360 0.47 -3.2

Or see this region's nucleotide sequence