Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00905 and RR42_RS00910 overlap by 4 nucleotides RR42_RS00910 and RR42_RS00915 are separated by 8 nucleotides RR42_RS00915 and RR42_RS00920 are separated by 62 nucleotides
RR42_RS00905: RR42_RS00905 - haloacid dehalogenase, at 217,765 to 218,454
_RS00905
RR42_RS00910: RR42_RS00910 - hypothetical protein, at 218,451 to 218,876
_RS00910
RR42_RS00915: RR42_RS00915 - glutathione S-transferase, at 218,885 to 219,559
_RS00915
RR42_RS00920: RR42_RS00920 - dienelactone hydrolase, at 219,622 to 220,527
_RS00920
Position (kb) 218
219
220 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 217.899 kb on + strand, within RR42_RS00905 at 217.900 kb on - strand, within RR42_RS00905 at 218.202 kb on + strand, within RR42_RS00905 at 218.203 kb on - strand, within RR42_RS00905 at 218.203 kb on - strand, within RR42_RS00905 at 218.251 kb on + strand, within RR42_RS00905 at 218.251 kb on + strand, within RR42_RS00905 at 218.251 kb on + strand, within RR42_RS00905 at 218.252 kb on - strand, within RR42_RS00905 at 218.310 kb on + strand, within RR42_RS00905 at 218.425 kb on - strand at 218.592 kb on + strand, within RR42_RS00910 at 218.592 kb on + strand, within RR42_RS00910 at 218.592 kb on + strand, within RR42_RS00910 at 218.639 kb on + strand, within RR42_RS00910 at 218.639 kb on + strand, within RR42_RS00910 at 218.640 kb on - strand, within RR42_RS00910 at 218.640 kb on - strand, within RR42_RS00910 at 218.752 kb on - strand, within RR42_RS00910 at 218.800 kb on + strand, within RR42_RS00910 at 218.801 kb on - strand, within RR42_RS00910 at 218.841 kb on + strand at 218.912 kb on + strand at 218.912 kb on + strand at 218.921 kb on + strand at 218.921 kb on + strand at 218.922 kb on - strand at 218.922 kb on - strand at 218.922 kb on - strand at 218.948 kb on + strand at 218.948 kb on + strand at 218.949 kb on - strand at 218.949 kb on - strand at 218.949 kb on - strand at 219.161 kb on + strand, within RR42_RS00915 at 219.162 kb on - strand, within RR42_RS00915 at 219.162 kb on - strand, within RR42_RS00915 at 219.162 kb on - strand, within RR42_RS00915 at 219.162 kb on - strand, within RR42_RS00915 at 219.236 kb on + strand, within RR42_RS00915 at 219.236 kb on + strand, within RR42_RS00915 at 219.248 kb on + strand, within RR42_RS00915 at 219.249 kb on - strand, within RR42_RS00915 at 219.419 kb on + strand, within RR42_RS00915 at 219.516 kb on - strand at 219.950 kb on - strand, within RR42_RS00920 at 220.072 kb on + strand, within RR42_RS00920 at 220.072 kb on + strand, within RR42_RS00920 at 220.072 kb on + strand, within RR42_RS00920 at 220.072 kb on + strand, within RR42_RS00920 at 220.073 kb on - strand, within RR42_RS00920 at 220.073 kb on - strand, within RR42_RS00920 at 220.073 kb on - strand, within RR42_RS00920 at 220.073 kb on - strand, within RR42_RS00920 at 220.073 kb on - strand, within RR42_RS00920 at 220.090 kb on + strand, within RR42_RS00920 at 220.090 kb on + strand, within RR42_RS00920 at 220.091 kb on - strand, within RR42_RS00920 at 220.091 kb on - strand, within RR42_RS00920 at 220.091 kb on - strand, within RR42_RS00920 at 220.168 kb on + strand, within RR42_RS00920 at 220.169 kb on - strand, within RR42_RS00920 at 220.318 kb on + strand, within RR42_RS00920 at 220.318 kb on + strand, within RR42_RS00920 at 220.318 kb on + strand, within RR42_RS00920 at 220.319 kb on - strand, within RR42_RS00920 at 220.358 kb on - strand, within RR42_RS00920 at 220.358 kb on - strand, within RR42_RS00920 at 220.405 kb on + strand, within RR42_RS00920 at 220.431 kb on + strand, within RR42_RS00920 at 220.431 kb on + strand, within RR42_RS00920 at 220.431 kb on + strand, within RR42_RS00920 at 220.431 kb on + strand, within RR42_RS00920 at 220.432 kb on - strand, within RR42_RS00920
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 217,899 + RR42_RS00905 0.19 +0.4 217,900 - RR42_RS00905 0.20 +0.2 218,202 + RR42_RS00905 0.63 -0.7 218,203 - RR42_RS00905 0.63 -1.0 218,203 - RR42_RS00905 0.63 -0.5 218,251 + RR42_RS00905 0.70 +1.1 218,251 + RR42_RS00905 0.70 +0.4 218,251 + RR42_RS00905 0.70 -0.9 218,252 - RR42_RS00905 0.71 -0.2 218,310 + RR42_RS00905 0.79 +1.1 218,425 - +0.0 218,592 + RR42_RS00910 0.33 +0.1 218,592 + RR42_RS00910 0.33 -0.6 218,592 + RR42_RS00910 0.33 +0.5 218,639 + RR42_RS00910 0.44 +0.3 218,639 + RR42_RS00910 0.44 +0.7 218,640 - RR42_RS00910 0.44 -0.6 218,640 - RR42_RS00910 0.44 +0.9 218,752 - RR42_RS00910 0.71 +0.5 218,800 + RR42_RS00910 0.82 +0.3 218,801 - RR42_RS00910 0.82 -0.2 218,841 + -0.5 218,912 + +0.5 218,912 + -1.3 218,921 + +0.2 218,921 + +0.5 218,922 - +0.4 218,922 - +0.0 218,922 - +0.8 218,948 + +0.0 218,948 + +1.1 218,949 - +0.1 218,949 - -0.8 218,949 - +1.1 219,161 + RR42_RS00915 0.41 -0.5 219,162 - RR42_RS00915 0.41 +0.0 219,162 - RR42_RS00915 0.41 +0.8 219,162 - RR42_RS00915 0.41 -1.7 219,162 - RR42_RS00915 0.41 -0.2 219,236 + RR42_RS00915 0.52 -0.5 219,236 + RR42_RS00915 0.52 +0.9 219,248 + RR42_RS00915 0.54 +3.9 219,249 - RR42_RS00915 0.54 +0.6 219,419 + RR42_RS00915 0.79 +0.8 219,516 - -0.3 219,950 - RR42_RS00920 0.36 -0.6 220,072 + RR42_RS00920 0.50 +1.7 220,072 + RR42_RS00920 0.50 +0.7 220,072 + RR42_RS00920 0.50 +1.1 220,072 + RR42_RS00920 0.50 -0.3 220,073 - RR42_RS00920 0.50 -0.1 220,073 - RR42_RS00920 0.50 +0.2 220,073 - RR42_RS00920 0.50 -0.6 220,073 - RR42_RS00920 0.50 +0.2 220,073 - RR42_RS00920 0.50 +0.1 220,090 + RR42_RS00920 0.52 -0.4 220,090 + RR42_RS00920 0.52 +0.1 220,091 - RR42_RS00920 0.52 +0.0 220,091 - RR42_RS00920 0.52 +1.1 220,091 - RR42_RS00920 0.52 +1.2 220,168 + RR42_RS00920 0.60 +0.2 220,169 - RR42_RS00920 0.60 -0.3 220,318 + RR42_RS00920 0.77 +0.2 220,318 + RR42_RS00920 0.77 -1.3 220,318 + RR42_RS00920 0.77 -1.4 220,319 - RR42_RS00920 0.77 -0.9 220,358 - RR42_RS00920 0.81 +0.4 220,358 - RR42_RS00920 0.81 +0.3 220,405 + RR42_RS00920 0.86 -0.3 220,431 + RR42_RS00920 0.89 -0.5 220,431 + RR42_RS00920 0.89 +0.1 220,431 + RR42_RS00920 0.89 -1.5 220,431 + RR42_RS00920 0.89 -0.7 220,432 - RR42_RS00920 0.89 -1.0
Or see this region's nucleotide sequence