Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18530 and CA265_RS18535 are separated by 33 nucleotides CA265_RS18535 and CA265_RS18540 are separated by 40 nucleotides CA265_RS18540 and CA265_RS18545 are separated by 89 nucleotides
CA265_RS18530: CA265_RS18530 - aspartate aminotransferase family protein, at 4,606,649 to 4,607,797
_RS18530
CA265_RS18535: CA265_RS18535 - four helix bundle protein, at 4,607,831 to 4,608,202
_RS18535
CA265_RS18540: CA265_RS18540 - N-succinylglutamylphosphate reductase (EC 1.2.1.38) <small>(from data)</small>, at 4,608,243 to 4,609,223
_RS18540
CA265_RS18545: CA265_RS18545 - argininosuccinate synthase, at 4,609,313 to 4,610,500
_RS18545
Position (kb) 4608
4609
4610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4607.586 kb on - strand, within CA265_RS18530 at 4607.627 kb on + strand, within CA265_RS18530 at 4607.809 kb on + strand at 4607.809 kb on + strand at 4607.810 kb on - strand at 4607.811 kb on + strand at 4607.877 kb on - strand, within CA265_RS18535 at 4607.910 kb on - strand, within CA265_RS18535 at 4607.957 kb on + strand, within CA265_RS18535 at 4607.972 kb on + strand, within CA265_RS18535 at 4608.096 kb on - strand, within CA265_RS18535 at 4608.151 kb on + strand, within CA265_RS18535 at 4608.152 kb on - strand, within CA265_RS18535 at 4608.156 kb on - strand, within CA265_RS18535 at 4608.207 kb on + strand at 4608.240 kb on + strand at 4608.470 kb on + strand, within CA265_RS18540 at 4608.505 kb on - strand, within CA265_RS18540 at 4608.671 kb on + strand, within CA265_RS18540 at 4608.734 kb on + strand, within CA265_RS18540 at 4608.804 kb on - strand, within CA265_RS18540 at 4608.957 kb on - strand, within CA265_RS18540 at 4609.028 kb on + strand, within CA265_RS18540 at 4609.082 kb on + strand, within CA265_RS18540 at 4609.083 kb on - strand, within CA265_RS18540 at 4609.086 kb on + strand, within CA265_RS18540 at 4609.099 kb on - strand, within CA265_RS18540 at 4609.293 kb on + strand at 4609.293 kb on + strand at 4609.293 kb on + strand at 4609.328 kb on + strand at 4609.362 kb on - strand at 4609.416 kb on + strand at 4609.430 kb on - strand at 4609.450 kb on + strand, within CA265_RS18545 at 4609.451 kb on - strand, within CA265_RS18545 at 4609.451 kb on - strand, within CA265_RS18545 at 4609.451 kb on - strand, within CA265_RS18545 at 4609.494 kb on - strand, within CA265_RS18545 at 4609.608 kb on - strand, within CA265_RS18545 at 4609.672 kb on + strand, within CA265_RS18545 at 4609.857 kb on - strand, within CA265_RS18545 at 4609.857 kb on - strand, within CA265_RS18545 at 4609.862 kb on + strand, within CA265_RS18545 at 4610.005 kb on - strand, within CA265_RS18545 at 4610.005 kb on - strand, within CA265_RS18545 at 4610.066 kb on - strand, within CA265_RS18545 at 4610.095 kb on + strand, within CA265_RS18545 at 4610.096 kb on - strand, within CA265_RS18545 at 4610.104 kb on + strand, within CA265_RS18545 at 4610.113 kb on + strand, within CA265_RS18545 at 4610.187 kb on + strand, within CA265_RS18545 at 4610.188 kb on - strand, within CA265_RS18545
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,607,586 - CA265_RS18530 0.82 -0.7 4,607,627 + CA265_RS18530 0.85 -1.8 4,607,809 + -1.8 4,607,809 + -3.8 4,607,810 - +0.6 4,607,811 + -3.3 4,607,877 - CA265_RS18535 0.12 +0.1 4,607,910 - CA265_RS18535 0.21 +0.4 4,607,957 + CA265_RS18535 0.34 -3.3 4,607,972 + CA265_RS18535 0.38 -2.4 4,608,096 - CA265_RS18535 0.71 +0.5 4,608,151 + CA265_RS18535 0.86 -4.1 4,608,152 - CA265_RS18535 0.86 -0.1 4,608,156 - CA265_RS18535 0.87 +0.6 4,608,207 + -2.8 4,608,240 + -0.4 4,608,470 + CA265_RS18540 0.23 -0.3 4,608,505 - CA265_RS18540 0.27 +1.9 4,608,671 + CA265_RS18540 0.44 -2.6 4,608,734 + CA265_RS18540 0.50 -2.6 4,608,804 - CA265_RS18540 0.57 -1.7 4,608,957 - CA265_RS18540 0.73 -1.1 4,609,028 + CA265_RS18540 0.80 -1.6 4,609,082 + CA265_RS18540 0.86 -1.3 4,609,083 - CA265_RS18540 0.86 -2.6 4,609,086 + CA265_RS18540 0.86 -2.4 4,609,099 - CA265_RS18540 0.87 -0.7 4,609,293 + -2.1 4,609,293 + -1.4 4,609,293 + -2.7 4,609,328 + -2.2 4,609,362 - -1.8 4,609,416 + +0.3 4,609,430 - -2.3 4,609,450 + CA265_RS18545 0.12 -3.7 4,609,451 - CA265_RS18545 0.12 -2.0 4,609,451 - CA265_RS18545 0.12 -0.7 4,609,451 - CA265_RS18545 0.12 -3.1 4,609,494 - CA265_RS18545 0.15 -2.5 4,609,608 - CA265_RS18545 0.25 -1.4 4,609,672 + CA265_RS18545 0.30 -1.6 4,609,857 - CA265_RS18545 0.46 -2.2 4,609,857 - CA265_RS18545 0.46 -1.3 4,609,862 + CA265_RS18545 0.46 -2.2 4,610,005 - CA265_RS18545 0.58 -3.5 4,610,005 - CA265_RS18545 0.58 -2.4 4,610,066 - CA265_RS18545 0.63 -4.7 4,610,095 + CA265_RS18545 0.66 -2.3 4,610,096 - CA265_RS18545 0.66 -0.7 4,610,104 + CA265_RS18545 0.67 -2.6 4,610,113 + CA265_RS18545 0.67 -3.9 4,610,187 + CA265_RS18545 0.74 -2.4 4,610,188 - CA265_RS18545 0.74 -4.2
Or see this region's nucleotide sequence