Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04125 and CA265_RS04130 are separated by 76 nucleotides CA265_RS04130 and CA265_RS04135 are separated by 678 nucleotides
CA265_RS04125: CA265_RS04125 - multidrug transporter, at 993,195 to 994,204
_RS04125
CA265_RS04130: CA265_RS04130 - hypothetical protein, at 994,281 to 994,751
_RS04130
CA265_RS04135: CA265_RS04135 - uroporphyrinogen-III C-methyltransferase, at 995,430 to 996,224
_RS04135
Position (kb) 994
995 Strain fitness (log2 ratio) -2
-1
0
1 at 993.353 kb on + strand, within CA265_RS04125 at 993.368 kb on + strand, within CA265_RS04125 at 993.373 kb on + strand, within CA265_RS04125 at 993.373 kb on + strand, within CA265_RS04125 at 993.373 kb on + strand, within CA265_RS04125 at 993.373 kb on + strand, within CA265_RS04125 at 993.396 kb on - strand, within CA265_RS04125 at 993.602 kb on - strand, within CA265_RS04125 at 993.607 kb on - strand, within CA265_RS04125 at 993.607 kb on - strand, within CA265_RS04125 at 993.612 kb on - strand, within CA265_RS04125 at 993.622 kb on - strand, within CA265_RS04125 at 993.623 kb on + strand, within CA265_RS04125 at 993.651 kb on + strand, within CA265_RS04125 at 993.671 kb on + strand, within CA265_RS04125 at 993.738 kb on + strand, within CA265_RS04125 at 993.796 kb on - strand, within CA265_RS04125 at 993.818 kb on - strand, within CA265_RS04125 at 993.827 kb on + strand, within CA265_RS04125 at 993.892 kb on - strand, within CA265_RS04125 at 993.901 kb on + strand, within CA265_RS04125 at 993.902 kb on - strand, within CA265_RS04125 at 993.902 kb on - strand, within CA265_RS04125 at 993.913 kb on - strand, within CA265_RS04125 at 993.987 kb on - strand, within CA265_RS04125 at 993.992 kb on - strand, within CA265_RS04125 at 994.004 kb on - strand, within CA265_RS04125 at 994.021 kb on - strand, within CA265_RS04125 at 994.036 kb on + strand, within CA265_RS04125 at 994.037 kb on - strand, within CA265_RS04125 at 994.105 kb on + strand at 994.111 kb on + strand at 994.112 kb on - strand at 994.112 kb on - strand at 994.240 kb on + strand at 994.240 kb on + strand at 994.240 kb on + strand at 994.247 kb on - strand at 994.277 kb on + strand at 994.278 kb on - strand at 994.330 kb on - strand, within CA265_RS04130 at 994.488 kb on - strand, within CA265_RS04130 at 994.584 kb on - strand, within CA265_RS04130 at 994.648 kb on + strand, within CA265_RS04130 at 994.694 kb on + strand, within CA265_RS04130 at 994.701 kb on - strand, within CA265_RS04130 at 994.701 kb on - strand, within CA265_RS04130 at 994.738 kb on + strand at 994.745 kb on + strand at 994.746 kb on - strand at 994.750 kb on - strand at 994.779 kb on - strand at 994.815 kb on + strand at 994.977 kb on - strand at 995.067 kb on - strand at 995.067 kb on - strand at 995.114 kb on + strand at 995.115 kb on - strand at 995.237 kb on - strand at 995.243 kb on + strand at 995.244 kb on - strand at 995.284 kb on - strand at 995.406 kb on + strand at 995.406 kb on + strand at 995.406 kb on + strand at 995.406 kb on + strand at 995.407 kb on - strand at 995.422 kb on + strand at 995.422 kb on + strand at 995.429 kb on + strand at 995.482 kb on + strand at 995.560 kb on - strand, within CA265_RS04135 at 995.585 kb on - strand, within CA265_RS04135 at 995.587 kb on + strand, within CA265_RS04135 at 995.588 kb on - strand, within CA265_RS04135 at 995.686 kb on - strand, within CA265_RS04135 at 995.686 kb on - strand, within CA265_RS04135
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 993,353 + CA265_RS04125 0.16 -1.3 993,368 + CA265_RS04125 0.17 -1.2 993,373 + CA265_RS04125 0.18 +0.1 993,373 + CA265_RS04125 0.18 -0.3 993,373 + CA265_RS04125 0.18 -0.4 993,373 + CA265_RS04125 0.18 +0.5 993,396 - CA265_RS04125 0.20 -1.1 993,602 - CA265_RS04125 0.40 -0.4 993,607 - CA265_RS04125 0.41 +0.1 993,607 - CA265_RS04125 0.41 -0.3 993,612 - CA265_RS04125 0.41 +1.2 993,622 - CA265_RS04125 0.42 +0.4 993,623 + CA265_RS04125 0.42 +0.3 993,651 + CA265_RS04125 0.45 -0.6 993,671 + CA265_RS04125 0.47 -0.7 993,738 + CA265_RS04125 0.54 +0.9 993,796 - CA265_RS04125 0.60 -0.1 993,818 - CA265_RS04125 0.62 -0.8 993,827 + CA265_RS04125 0.63 -0.5 993,892 - CA265_RS04125 0.69 +0.1 993,901 + CA265_RS04125 0.70 -0.4 993,902 - CA265_RS04125 0.70 -1.0 993,902 - CA265_RS04125 0.70 -0.5 993,913 - CA265_RS04125 0.71 -0.2 993,987 - CA265_RS04125 0.78 -0.2 993,992 - CA265_RS04125 0.79 +0.5 994,004 - CA265_RS04125 0.80 -0.2 994,021 - CA265_RS04125 0.82 +0.3 994,036 + CA265_RS04125 0.83 -0.3 994,037 - CA265_RS04125 0.83 -0.1 994,105 + -0.5 994,111 + +0.2 994,112 - +0.7 994,112 - +0.2 994,240 + +0.9 994,240 + +0.3 994,240 + -0.6 994,247 - +1.2 994,277 + -0.2 994,278 - +0.0 994,330 - CA265_RS04130 0.10 +1.1 994,488 - CA265_RS04130 0.44 -0.0 994,584 - CA265_RS04130 0.64 -0.0 994,648 + CA265_RS04130 0.78 +1.2 994,694 + CA265_RS04130 0.88 -0.4 994,701 - CA265_RS04130 0.89 +1.1 994,701 - CA265_RS04130 0.89 -0.8 994,738 + +0.1 994,745 + +1.2 994,746 - -1.4 994,750 - +0.7 994,779 - +0.2 994,815 + +1.6 994,977 - +0.9 995,067 - -0.2 995,067 - +0.0 995,114 + -1.8 995,115 - -0.6 995,237 - +0.2 995,243 + +1.5 995,244 - -0.2 995,284 - -0.3 995,406 + -0.2 995,406 + +0.9 995,406 + +0.1 995,406 + -0.5 995,407 - -1.1 995,422 + -1.2 995,422 + -0.7 995,429 + -1.0 995,482 + +0.2 995,560 - CA265_RS04135 0.16 +0.1 995,585 - CA265_RS04135 0.19 -0.3 995,587 + CA265_RS04135 0.20 +0.0 995,588 - CA265_RS04135 0.20 +0.2 995,686 - CA265_RS04135 0.32 +0.7 995,686 - CA265_RS04135 0.32 +0.2
Or see this region's nucleotide sequence