Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19105

Experiment: CDM1 without Glycine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Glycine
2,059,259	+		BBR_RS19100	0.66	-2.4
2,059,259	+		BBR_RS19100	0.66	+1.2
2,059,267	-		BBR_RS19100	0.67	+0.9
2,059,280	-		BBR_RS19100	0.69	+3.3
2,059,302	+		BBR_RS19100	0.72	+0.7
2,059,307	+		BBR_RS19100	0.73	-2.1
2,059,307	+		BBR_RS19100	0.73	-2.6
2,059,321	+		BBR_RS19100	0.75	-2.1
2,059,324	-		BBR_RS19100	0.75	+1.6
2,059,324	-		BBR_RS19100	0.75	-0.9
2,059,348	-		BBR_RS19100	0.79	-0.1
2,059,349	+		BBR_RS19100	0.79	-0.7
2,059,349	+		BBR_RS19100	0.79	-2.1
2,059,349	+		BBR_RS19100	0.79	-1.1
2,059,373	+		BBR_RS19100	0.83	+2.1
2,059,373	+		BBR_RS19100	0.83	-2.2
2,059,373	+		BBR_RS19100	0.83	-2.2
2,059,373	+		BBR_RS19100	0.83	-1.6
2,059,373	+		BBR_RS19100	0.83	-1.8
2,059,381	-		BBR_RS19100	0.84	+0.7
2,059,381	-		BBR_RS19100	0.84	-1.3
2,059,404	-		BBR_RS19100	0.87	+2.3
2,059,406	+		BBR_RS19100	0.88	-1.6
2,059,409	-		BBR_RS19100	0.88	+2.8
2,059,414	+		BBR_RS19100	0.89	-0.5
2,059,427	-				+2.3
2,059,435	-				-1.4
2,059,486	+				+0.6
2,059,486	+				+2.0
2,059,486	+				+2.1
2,059,491	+				+1.1
2,059,491	+				-2.4
2,059,493	+				-3.3
2,059,500	+				-0.8
2,059,501	+				-0.7
2,059,505	+				-3.0
2,059,510	+				-1.2
2,059,513	-				+0.6
2,059,513	-				-2.8
2,059,513	-				+2.1
2,059,518	-				-1.5
2,059,518	-				-2.5
2,059,520	+				-3.2
2,059,550	+				+0.7
2,059,550	+				-3.0
2,059,555	+				+1.8
2,059,555	+				+2.8
2,059,557	+				-3.1
2,059,557	+				+2.5
2,059,563	-				+0.2
2,059,579	+		BBR_RS21075	0.11	+4.0
2,059,590	+		BBR_RS21075	0.13	-1.7
2,059,590	+		BBR_RS21075	0.13	+1.9
2,059,611	+		BBR_RS21075	0.16	+4.5
2,059,622	+		BBR_RS21075	0.17	-2.5
2,059,622	+		BBR_RS21075	0.17	-2.1
2,059,627	+		BBR_RS21075	0.18	+1.8
2,059,627	+		BBR_RS21075	0.18	-0.8
2,059,629	+		BBR_RS21075	0.18	-1.7
2,059,630	-		BBR_RS21075	0.18	-3.0
2,059,630	-		BBR_RS21075	0.18	+2.3
2,059,630	-		BBR_RS21075	0.18	-2.7
2,059,630	-		BBR_RS21075	0.18	-1.1
2,059,634	+		BBR_RS21075	0.19	+5.5
2,059,638	+		BBR_RS21075	0.19	-2.5
2,059,639	+		BBR_RS21075	0.20	+2.2
2,059,642	-		BBR_RS21075	0.20	+1.2
2,059,647	+		BBR_RS21075	0.21	+1.3
2,059,647	-		BBR_RS21075	0.21	-1.7
2,059,654	+		BBR_RS21075	0.22	-0.5
2,059,655	-		BBR_RS21075	0.22	-0.8
2,059,655	-		BBR_RS21075	0.22	-1.3
2,059,662	+		BBR_RS21075	0.23	-1.2
2,059,686	+		BBR_RS21075	0.26	-0.3
2,059,686	+		BBR_RS21075	0.26	+0.4
2,059,686	+		BBR_RS21075	0.26	-1.1
2,059,686	+		BBR_RS21075	0.26	-1.4
2,059,686	+		BBR_RS21075	0.26	+0.6
2,059,686	+		BBR_RS21075	0.26	+1.4
2,059,686	-		BBR_RS21075	0.26	-1.1
2,059,686	-		BBR_RS21075	0.26	-1.5
2,059,686	-		BBR_RS21075	0.26	+1.2
2,059,694	-		BBR_RS21075	0.28	-2.2
2,059,701	+		BBR_RS21075	0.29	-2.5
2,059,701	+		BBR_RS21075	0.29	-2.2
2,059,748	+		BBR_RS21075	0.35	-0.0
2,059,748	+		BBR_RS21075	0.35	+3.4
2,059,799	+		BBR_RS21075	0.43	+1.4
2,059,816	+		BBR_RS21075	0.45	-1.8
2,059,816	+		BBR_RS21075	0.45	+0.9
2,059,816	+		BBR_RS21075	0.45	+0.2
2,059,816	+		BBR_RS21075	0.45	-0.8
2,059,816	+		BBR_RS21075	0.45	+2.2
2,059,824	-		BBR_RS21075	0.46	-1.4
2,059,824	-		BBR_RS21075	0.46	-1.6
2,059,824	-		BBR_RS21075	0.46	+0.6
2,059,824	-		BBR_RS21075	0.46	-2.1
2,059,824	-		BBR_RS21075	0.46	+2.6
2,059,824	-		BBR_RS21075	0.46	-1.4
2,059,826	+		BBR_RS21075	0.47	+1.0
2,059,844	+		BBR_RS21075	0.49	-0.3
2,059,844	+		BBR_RS21075	0.49	+0.9
2,059,844	+		BBR_RS21075	0.49	-2.2
2,059,869	+		BBR_RS21075	0.53	-2.4
2,059,869	-		BBR_RS21075	0.53	-1.6
2,059,871	-		BBR_RS21075	0.53	-0.3
2,059,877	-		BBR_RS21075	0.54	+2.8
2,059,877	-		BBR_RS21075	0.54	+0.9
2,059,879	+		BBR_RS21075	0.54	+1.8
2,059,887	-		BBR_RS21075	0.55	-0.0
2,059,887	-		BBR_RS21075	0.55	+1.3
2,059,889	+		BBR_RS21075	0.56	-0.1
2,059,909	-		BBR_RS21075	0.59	-1.8
2,059,939	-		BBR_RS21075	0.63	+1.6
2,059,942	+		BBR_RS21075	0.63	-0.9
2,059,954	-		BBR_RS21075	0.65	+1.5
2,059,958	-		BBR_RS21075	0.66	+2.4
2,059,991	+		BBR_RS21075	0.70	+0.9
2,060,003	+		BBR_RS21075	0.72	+0.8
2,060,003	+		BBR_RS21075	0.72	+0.8
2,060,003	+		BBR_RS21075	0.72	+1.8
2,060,003	+		BBR_RS21075	0.72	-0.6
2,060,003	+		BBR_RS21075	0.72	-2.7
2,060,003	+		BBR_RS21075	0.72	+1.6
2,060,003	+		BBR_RS21075	0.72	+0.7
2,060,003	+		BBR_RS21075	0.72	-0.5
2,060,010	+		BBR_RS21075	0.73	+1.7
2,060,010	+		BBR_RS21075	0.73	+1.3
2,060,010	+		BBR_RS21075	0.73	+1.8
2,060,010	-		BBR_RS21075	0.73	+3.5
2,060,010	-		BBR_RS21075	0.73	-2.5
2,060,010	-		BBR_RS21075	0.73	-1.3
2,060,011	+		BBR_RS21075	0.73	+0.6
2,060,011	+		BBR_RS21075	0.73	+1.4
2,060,011	-		BBR_RS21075	0.73	+1.2
2,060,011	-		BBR_RS21075	0.73	+0.7
2,060,011	-		BBR_RS21075	0.73	-0.9
2,060,011	-		BBR_RS21075	0.73	+1.3
2,060,011	-		BBR_RS21075	0.73	-2.9
2,060,011	-		BBR_RS21075	0.73	+2.1
2,060,011	-		BBR_RS21075	0.73	+1.4
2,060,011	-		BBR_RS21075	0.73	+3.8
2,060,011	-		BBR_RS21075	0.73	-2.2
2,060,011	-		BBR_RS21075	0.73	-1.6
2,060,016	-		BBR_RS21075	0.74	+3.9
2,060,022	-		BBR_RS21075	0.75	-2.0
2,060,046	-		BBR_RS21075	0.78	+4.0
2,060,046	-		BBR_RS21075	0.78	+2.3
2,060,048	+		BBR_RS21075	0.79	+3.2
2,060,048	+		BBR_RS21075	0.79	+1.0
2,060,048	+		BBR_RS21075	0.79	-0.4
2,060,048	+		BBR_RS21075	0.79	-1.3
2,060,054	-		BBR_RS21075	0.80	+3.3
2,060,056	-		BBR_RS21075	0.80	-1.4
2,060,080	+		BBR_RS21075	0.83	-2.7
2,060,097	-		BBR_RS21075	0.86	-2.4
2,060,135	+				-0.3
2,060,135	+				-0.4
2,060,150	+				-2.2
2,060,150	+				+3.2
2,060,150	+				-2.1
2,060,150	+				+1.4
2,060,150	+				-1.3
2,060,158	-				+0.3
2,060,158	-				+2.2
2,060,158	-				+1.5
2,060,158	-				-0.7
2,060,163	-				-0.7
2,060,163	-				+3.0
2,060,171	+				+1.1
2,060,171	+				-0.2
2,060,171	-				+2.0
2,060,178	-				+2.5
2,060,191	+				-0.5
2,060,192	+				+0.8
2,060,192	+				-1.9
2,060,200	-				-2.2
2,060,210	-				+1.9
2,060,228	-				-2.1
2,060,228	-				-2.4
2,060,240	-				-1.5
2,060,240	-				+0.4
2,060,259	+				-0.8
2,060,267	-				+1.9
2,060,289	+		BBR_RS19105	0.18	-1.4
2,060,314	+		BBR_RS19105	0.32	-1.5
2,060,329	+		BBR_RS19105	0.40	-2.0
2,060,349	+		BBR_RS19105	0.51	-1.3
2,060,349	+		BBR_RS19105	0.51	-1.9
2,060,349	-		BBR_RS19105	0.51	+1.0
2,060,349	-		BBR_RS19105	0.51	-0.0
2,060,351	+		BBR_RS19105	0.52	-2.6
2,060,351	+		BBR_RS19105	0.52	-1.8
2,060,351	+		BBR_RS19105	0.52	-2.2
2,060,352	+		BBR_RS19105	0.52	+0.2
2,060,357	-		BBR_RS19105	0.55	+0.6
2,060,359	-		BBR_RS19105	0.56	-1.4
2,060,365	-		BBR_RS19105	0.59	-0.8
2,060,374	+		BBR_RS19105	0.64	-1.9
2,060,374	+		BBR_RS19105	0.64	-3.9
2,060,374	+		BBR_RS19105	0.64	-0.8
2,060,374	+		BBR_RS19105	0.64	-2.2
2,060,374	+		BBR_RS19105	0.64	-1.9
2,060,378	-		BBR_RS19105	0.66	-1.5
2,060,382	-		BBR_RS19105	0.68	-2.6
2,060,416	-		BBR_RS19105	0.87	-0.6
2,060,418	+		BBR_RS19105	0.88	+1.2
2,060,435	-				+1.8
2,060,435	-				+1.0
2,060,466	-				+1.9
2,060,472	+				+3.1
2,060,495	+				-2.2
2,060,500	+				-2.7
2,060,508	-				-0.9
2,060,509	+				+2.9
2,060,509	+				+3.4
2,060,518	-				-2.0
2,060,524	-				+1.5
2,060,524	-				-0.5
2,060,555	-				+1.5
2,060,558	+				+1.8
2,060,558	+				-1.5
2,060,566	-				-2.4
2,060,566	-				+3.8
2,060,566	-				+3.0
2,060,566	-				+1.2
2,060,573	+				-1.5
2,060,573	+				-0.3
2,060,573	+				-1.7
2,060,573	+				+1.3
2,060,573	+				-2.2
2,060,573	+				-2.1
2,060,573	+				+0.1
2,060,573	+				-2.3
2,060,575	+				+1.7
2,060,581	-				+2.6
2,060,581	-				+2.0
2,060,605	-				+1.6
2,060,620	+				+3.2
2,060,628	-				-2.7
2,060,628	-				+0.7
2,060,650	+		BBR_RS19110	0.13	-0.0
2,060,650	+		BBR_RS19110	0.13	+3.9
2,060,650	+		BBR_RS19110	0.13	-1.0
2,060,650	+		BBR_RS19110	0.13	-2.9
2,060,653	-		BBR_RS19110	0.13	-3.3
2,060,658	-		BBR_RS19110	0.14	-0.7
2,060,661	+		BBR_RS19110	0.15	+0.6
2,060,667	-		BBR_RS19110	0.16	+1.3
2,060,667	-		BBR_RS19110	0.16	+3.2
2,060,669	-		BBR_RS19110	0.16	-0.6
2,060,669	-		BBR_RS19110	0.16	+1.1
2,060,669	-		BBR_RS19110	0.16	+1.5
2,060,670	-		BBR_RS19110	0.16	-1.9
2,060,672	+		BBR_RS19110	0.17	+1.9
2,060,676	+		BBR_RS19110	0.17	+0.7
2,060,676	+		BBR_RS19110	0.17	+2.3
2,060,701	-		BBR_RS19110	0.22	-3.0
2,060,701	-		BBR_RS19110	0.22	-2.6
2,060,739	-		BBR_RS19110	0.28	+2.8
2,060,751	+		BBR_RS19110	0.31	-1.3
2,060,751	+		BBR_RS19110	0.31	+2.1
2,060,753	-		BBR_RS19110	0.31	+1.2
2,060,759	-		BBR_RS19110	0.32	+3.8
2,060,759	-		BBR_RS19110	0.32	+2.2
2,060,764	-		BBR_RS19110	0.33	+2.6
2,060,764	-		BBR_RS19110	0.33	+1.7
2,060,769	+		BBR_RS19110	0.34	+0.8
2,060,769	-		BBR_RS19110	0.34	-1.6
2,060,777	-		BBR_RS19110	0.35	-2.2
2,060,777	-		BBR_RS19110	0.35	+2.4
2,060,777	-		BBR_RS19110	0.35	+6.0
2,060,793	+		BBR_RS19110	0.38	+1.2
2,060,795	+		BBR_RS19110	0.38	-1.8
2,060,795	+		BBR_RS19110	0.38	+0.8
2,060,822	-		BBR_RS19110	0.43	+2.2
2,060,833	+		BBR_RS19110	0.45	+2.1
2,060,843	-		BBR_RS19110	0.47	+1.7
2,060,851	-		BBR_RS19110	0.48	+2.7
2,060,859	+		BBR_RS19110	0.50	+2.8
2,060,859	+		BBR_RS19110	0.50	+2.0
2,060,867	-		BBR_RS19110	0.51	-1.4
2,060,867	-		BBR_RS19110	0.51	-2.2
2,060,885	+		BBR_RS19110	0.54	+1.6
2,060,932	+		BBR_RS19110	0.62	+2.6
2,060,936	+		BBR_RS19110	0.63	-2.8
2,060,939	+		BBR_RS19110	0.64	-1.3
2,060,940	-		BBR_RS19110	0.64	+1.2
2,060,942	+		BBR_RS19110	0.64	+0.1
2,060,965	-		BBR_RS19110	0.68	-0.3
2,060,967	-		BBR_RS19110	0.69	-1.9
2,060,974	+		BBR_RS19110	0.70	-1.9
2,060,977	-		BBR_RS19110	0.70	-2.6
2,061,006	+		BBR_RS19110	0.75	-1.7
2,061,009	-		BBR_RS19110	0.76	+1.3
2,061,009	-		BBR_RS19110	0.76	+2.1
2,061,022	-		BBR_RS19110	0.78	+4.5
2,061,022	-		BBR_RS19110	0.78	-3.8
2,061,024	+		BBR_RS19110	0.79	-1.3
2,061,032	-		BBR_RS19110	0.80	+1.7
2,061,050	+		BBR_RS19110	0.83	-0.2
2,061,060	+		BBR_RS19110	0.85	+0.3
2,061,081	-		BBR_RS19110	0.89	-2.8
2,061,095	+				-2.2
2,061,095	+				-1.9
2,061,105	-				-0.2
2,061,107	-				+2.1
2,061,117	-				+3.2
2,061,131	+				+1.4
2,061,139	-				-1.8
2,061,163	+				-1.4
2,061,187	+				-0.3
2,061,199	+				-2.3
2,061,200	+				-1.3
2,061,205	-				+0.4
2,061,205	-				+2.0
2,061,222	+				-2.1
2,061,244	-				+1.6
2,061,246	-				+2.5
2,061,248	-				+1.8
2,061,262	-				-0.0
2,061,281	-				+3.0
2,061,285	+				-0.4
2,061,285	+				+2.0
2,061,285	+				-1.9
2,061,290	-				+1.3
2,061,293	-				+2.7
2,061,293	-				-2.3
2,061,295	+				+0.4
2,061,295	+				+0.1
2,061,295	+				-0.2
2,061,297	+				-1.6
2,061,303	-				+2.1
2,061,303	-				+2.8
2,061,308	-				+0.4
2,061,313	-				+2.6
2,061,315	-				+3.2
2,061,316	+				+1.1
2,061,317	-				-0.6
2,061,319	+				+3.8
2,061,327	-				-0.8
2,061,354	+				+0.1
2,061,366	+				-0.6
2,061,366	+				+1.4
2,061,369	+				-1.8
2,061,374	+				+3.0
2,061,375	-				+2.3
2,061,377	-				-0.5
2,061,377	-				-1.2
2,061,383	-				-2.5
2,061,401	+				-2.4
2,061,404	+		BBR_RS19115	0.10	+1.9
2,061,406	+		BBR_RS19115	0.11	+1.7
2,061,412	-		BBR_RS19115	0.14	+3.5
2,061,414	-		BBR_RS19115	0.15	+0.1
2,061,435	-		BBR_RS19115	0.25	-1.3
2,061,438	-		BBR_RS19115	0.27	+0.6