Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18610

Experiment: CDM1 without Glycine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Glycine
1,959,365	-				+2.7
1,959,367	-				+2.5
1,959,385	+				+1.8
1,959,386	-				+0.6
1,959,629	-				-1.6
1,959,658	+				-2.1
1,959,660	+				+1.1
1,959,660	+				+1.3
1,959,660	+				-1.8
1,959,668	-				-0.3
1,959,683	-				+1.3
1,959,753	-				-0.6
1,959,765	-		BBR_RS21060	0.12	+2.6
1,959,784	-		BBR_RS21060	0.19	-1.5
1,959,794	-		BBR_RS21060	0.23	+2.9
1,959,794	-		BBR_RS21060	0.23	-0.3
1,959,832	+		BBR_RS21060	0.38	+1.5
1,959,835	-		BBR_RS21060	0.39	-1.7
1,959,867	-		BBR_RS21060	0.52	-2.2
1,959,867	-		BBR_RS21060	0.52	-2.5
1,959,880	-		BBR_RS21060	0.57	-1.9
1,959,930	-		BBR_RS21060	0.76	-1.3
1,959,930	-		BBR_RS21060	0.76	+0.4
1,960,013	-				-2.1
1,960,022	+				-0.9
1,960,022	+				-1.6
1,960,034	+				+0.1
1,960,034	+				+0.6
1,960,034	+				+1.6
1,960,074	+				-0.1
1,960,082	-				-2.5
1,960,119	+				+1.4
1,960,183	+				-0.0
1,960,189	+				-2.6
1,960,189	+				+4.2
1,960,213	-				-1.6
1,960,218	-				-2.0
1,960,218	-				+3.2
1,960,235	+		BBR_RS18610	0.11	+0.7
1,960,328	+		BBR_RS18610	0.19	+2.0
1,960,341	+		BBR_RS18610	0.20	-2.7
1,960,346	+		BBR_RS18610	0.20	+1.3
1,960,348	+		BBR_RS18610	0.20	-3.3
1,960,417	-		BBR_RS18610	0.26	-1.5
1,960,442	-		BBR_RS18610	0.28	-0.9
1,960,454	+		BBR_RS18610	0.29	-1.1
1,960,483	+		BBR_RS18610	0.32	+3.5
1,960,492	-		BBR_RS18610	0.32	-1.9
1,960,545	-		BBR_RS18610	0.37	-0.2
1,960,571	+		BBR_RS18610	0.39	-1.2
1,960,571	+		BBR_RS18610	0.39	-1.6
1,960,611	+		BBR_RS18610	0.42	-3.7
1,960,618	+		BBR_RS18610	0.43	+2.6
1,960,659	-		BBR_RS18610	0.46	-1.8
1,960,701	+		BBR_RS18610	0.50	-0.5
1,960,742	+		BBR_RS18610	0.53	-0.3
1,960,742	+		BBR_RS18610	0.53	+0.5
1,960,745	-		BBR_RS18610	0.54	-1.9
1,960,760	+		BBR_RS18610	0.55	-2.1
1,960,768	+		BBR_RS18610	0.56	+0.4
1,960,872	+		BBR_RS18610	0.64	-2.6
1,960,878	-		BBR_RS18610	0.65	-2.3
1,960,904	+		BBR_RS18610	0.67	-1.2
1,960,916	+		BBR_RS18610	0.68	-1.8
1,960,918	-		BBR_RS18610	0.68	-2.6
1,960,926	-		BBR_RS18610	0.69	+1.5
1,960,929	+		BBR_RS18610	0.69	+2.4
1,960,934	+		BBR_RS18610	0.70	-0.6
1,960,934	+		BBR_RS18610	0.70	+1.7
1,960,942	-		BBR_RS18610	0.70	-1.0
1,960,959	-		BBR_RS18610	0.72	-2.0
1,960,959	-		BBR_RS18610	0.72	-2.2
1,960,974	-		BBR_RS18610	0.73	+1.6
1,960,990	-		BBR_RS18610	0.74	-1.0
1,960,998	-		BBR_RS18610	0.75	-1.5
1,961,003	-		BBR_RS18610	0.75	+2.2
1,961,020	-		BBR_RS18610	0.77	+2.1
1,961,020	-		BBR_RS18610	0.77	+1.6
1,961,027	+		BBR_RS18610	0.77	+3.6
1,961,027	+		BBR_RS18610	0.77	-1.5
1,961,027	+		BBR_RS18610	0.77	+0.0
1,961,055	+		BBR_RS18610	0.80	-1.9
1,961,088	+		BBR_RS18610	0.82	-2.0
1,961,098	-		BBR_RS18610	0.83	-2.8
1,961,137	-		BBR_RS18610	0.87	-1.3
1,961,139	+		BBR_RS18610	0.87	+2.2
1,961,147	-		BBR_RS18610	0.87	-0.2
1,961,154	-		BBR_RS18610	0.88	+0.0
1,961,154	-		BBR_RS18610	0.88	-2.8
1,961,166	+		BBR_RS18610	0.89	-1.2
1,961,168	-		BBR_RS18610	0.89	-1.1
1,961,195	+				-2.6
1,961,195	+				+2.9
1,961,196	+				-1.3
1,961,204	-				+1.7
1,961,206	+				-1.2
1,961,211	+				-1.4
1,961,221	+				+2.3
1,961,226	+				-1.4
1,961,230	-				-2.6
1,961,230	-				+2.8
1,961,232	+				+2.7
1,961,232	+				-3.8
1,961,235	-				+2.5
1,961,240	-				-0.2
1,961,240	-				-2.1
1,961,254	+				+2.4
1,961,303	+				-0.9
1,961,311	-				-1.1
1,961,323	-				+2.8
1,961,325	+				+0.7
1,961,325	+				-0.8
1,961,326	-				-1.5
1,961,344	-				-2.5
1,961,345	-				-2.3
1,961,346	-				-0.5
1,961,346	-				+1.6
1,961,398	-				+0.1
1,961,432	+				-2.1
1,961,619	+		BBR_RS18615	0.11	+2.6
1,961,651	+		BBR_RS18615	0.12	-2.3
1,961,668	+		BBR_RS18615	0.13	+1.4
1,961,686	+		BBR_RS18615	0.14	-1.6
1,961,688	+		BBR_RS18615	0.14	-2.2
1,961,696	-		BBR_RS18615	0.14	-2.2
1,961,716	-		BBR_RS18615	0.15	+2.6
1,961,719	+		BBR_RS18615	0.15	-3.2
1,961,749	-		BBR_RS18615	0.17	-0.1
1,961,764	+		BBR_RS18615	0.17	+2.7
1,961,764	+		BBR_RS18615	0.17	+2.4
1,961,772	-		BBR_RS18615	0.18	+0.6
1,961,772	-		BBR_RS18615	0.18	+0.6
1,961,772	-		BBR_RS18615	0.18	+3.4
1,961,772	-		BBR_RS18615	0.18	-1.5
1,961,772	-		BBR_RS18615	0.18	+2.8
1,961,780	+		BBR_RS18615	0.18	-1.0
1,961,780	+		BBR_RS18615	0.18	-0.4
1,961,780	+		BBR_RS18615	0.18	+0.5
1,961,781	+		BBR_RS18615	0.18	+0.7
1,961,788	-		BBR_RS18615	0.19	-1.4
1,961,788	-		BBR_RS18615	0.19	-1.9
1,961,796	-		BBR_RS18615	0.19	+0.4
1,961,796	-		BBR_RS18615	0.19	-1.8
1,961,796	-		BBR_RS18615	0.19	+1.0
1,961,803	+		BBR_RS18615	0.19	+1.6
1,961,803	-		BBR_RS18615	0.19	+0.8
1,961,805	+		BBR_RS18615	0.19	+3.3
1,961,811	-		BBR_RS18615	0.20	+3.2
1,961,811	-		BBR_RS18615	0.20	-1.1
1,961,811	-		BBR_RS18615	0.20	+1.3
1,961,816	+		BBR_RS18615	0.20	-1.2
1,961,849	+		BBR_RS18615	0.21	-0.9
1,961,851	+		BBR_RS18615	0.21	-1.7
1,961,871	+		BBR_RS18615	0.22	-1.3
1,961,872	+		BBR_RS18615	0.22	+0.4
1,961,874	-		BBR_RS18615	0.22	+4.1
1,961,879	-		BBR_RS18615	0.23	-1.8
1,961,879	-		BBR_RS18615	0.23	+2.2
1,961,888	+		BBR_RS18615	0.23	-1.0
1,961,918	-		BBR_RS18615	0.24	+2.2
1,961,926	+		BBR_RS18615	0.25	-0.1
1,961,946	+		BBR_RS18615	0.26	+3.4
1,961,952	-		BBR_RS18615	0.26	-1.2
1,961,954	-		BBR_RS18615	0.26	-2.6
1,961,970	+		BBR_RS18615	0.27	-0.9
1,961,978	-		BBR_RS18615	0.27	-1.3
1,961,978	-		BBR_RS18615	0.27	+1.1
1,961,981	+		BBR_RS18615	0.27	-1.4
1,961,981	+		BBR_RS18615	0.27	+0.2
1,961,981	+		BBR_RS18615	0.27	-2.6
1,961,981	+		BBR_RS18615	0.27	-1.8
1,961,989	-		BBR_RS18615	0.28	+3.7
1,961,989	-		BBR_RS18615	0.28	+0.5
1,961,989	-		BBR_RS18615	0.28	+3.4
1,961,989	-		BBR_RS18615	0.28	-1.3
1,961,989	-		BBR_RS18615	0.28	-1.6
1,962,024	-		BBR_RS18615	0.29	+2.8
1,962,081	+		BBR_RS18615	0.32	-1.2
1,962,099	+		BBR_RS18615	0.33	-1.2
1,962,107	-		BBR_RS18615	0.33	-1.4
1,962,141	+		BBR_RS18615	0.35	-1.5
1,962,141	+		BBR_RS18615	0.35	+4.3
1,962,149	-		BBR_RS18615	0.35	-2.2
1,962,149	-		BBR_RS18615	0.35	+2.2
1,962,149	-		BBR_RS18615	0.35	+2.0
1,962,149	-		BBR_RS18615	0.35	+1.7
1,962,154	+		BBR_RS18615	0.35	-1.4
1,962,154	+		BBR_RS18615	0.35	+2.4
1,962,172	+		BBR_RS18615	0.36	+3.8
1,962,180	-		BBR_RS18615	0.36	-1.8
1,962,180	-		BBR_RS18615	0.36	+2.8
1,962,180	-		BBR_RS18615	0.36	-2.4
1,962,180	-		BBR_RS18615	0.36	-2.6
1,962,187	-		BBR_RS18615	0.37	-3.5
1,962,187	-		BBR_RS18615	0.37	+2.0
1,962,204	+		BBR_RS18615	0.37	+3.2
1,962,251	+		BBR_RS18615	0.40	-1.6
1,962,266	+		BBR_RS18615	0.40	-1.5
1,962,266	+		BBR_RS18615	0.40	-1.0
1,962,288	+		BBR_RS18615	0.41	+4.1
1,962,296	-		BBR_RS18615	0.42	-1.4