Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15165

Experiment: CDM1 without Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS15160 and BBR_RS15165 overlap by 11 nucleotidesBBR_RS15165 and BBR_RS15170 are separated by 24 nucleotides BBR_RS15160: BBR_RS15160 - PhoH family protein, at 1,168,621 to 1,169,805 _RS15160 BBR_RS15165: BBR_RS15165 - rRNA maturation RNase YbeY, at 1,169,795 to 1,170,346 _RS15165 BBR_RS15170: BBR_RS15170 - HlyC/CorC family transporter, at 1,170,371 to 1,171,804 _RS15170 Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1168.849 kb on + strand, within BBR_RS15160at 1168.891 kb on + strand, within BBR_RS15160at 1168.949 kb on - strand, within BBR_RS15160at 1168.949 kb on - strand, within BBR_RS15160at 1168.972 kb on + strand, within BBR_RS15160at 1169.049 kb on + strand, within BBR_RS15160at 1169.092 kb on + strand, within BBR_RS15160at 1169.142 kb on + strand, within BBR_RS15160at 1169.165 kb on - strand, within BBR_RS15160at 1169.331 kb on + strand, within BBR_RS15160at 1169.354 kb on - strand, within BBR_RS15160at 1169.355 kb on + strand, within BBR_RS15160at 1169.355 kb on + strand, within BBR_RS15160at 1169.405 kb on + strand, within BBR_RS15160at 1169.405 kb on + strand, within BBR_RS15160at 1169.405 kb on + strand, within BBR_RS15160at 1169.567 kb on + strand, within BBR_RS15160at 1169.589 kb on + strand, within BBR_RS15160at 1169.613 kb on + strand, within BBR_RS15160at 1170.296 kb on + strandat 1170.321 kb on - strandat 1170.366 kb on + strandat 1170.374 kb on - strandat 1170.392 kb on - strandat 1170.521 kb on + strand, within BBR_RS15170at 1170.534 kb on - strand, within BBR_RS15170at 1170.645 kb on + strand, within BBR_RS15170at 1170.653 kb on + strand, within BBR_RS15170at 1170.653 kb on + strand, within BBR_RS15170at 1170.670 kb on + strand, within BBR_RS15170at 1170.670 kb on + strand, within BBR_RS15170at 1170.686 kb on + strand, within BBR_RS15170at 1170.689 kb on + strand, within BBR_RS15170at 1170.709 kb on - strand, within BBR_RS15170at 1170.716 kb on - strand, within BBR_RS15170at 1170.718 kb on + strand, within BBR_RS15170at 1170.746 kb on - strand, within BBR_RS15170at 1170.759 kb on + strand, within BBR_RS15170at 1170.826 kb on - strand, within BBR_RS15170at 1170.858 kb on - strand, within BBR_RS15170at 1170.873 kb on - strand, within BBR_RS15170at 1170.913 kb on - strand, within BBR_RS15170at 1170.922 kb on - strand, within BBR_RS15170at 1170.949 kb on + strand, within BBR_RS15170at 1170.953 kb on - strand, within BBR_RS15170at 1170.964 kb on + strand, within BBR_RS15170at 1170.964 kb on + strand, within BBR_RS15170at 1170.964 kb on + strand, within BBR_RS15170at 1170.972 kb on - strand, within BBR_RS15170at 1171.055 kb on + strand, within BBR_RS15170at 1171.055 kb on + strand, within BBR_RS15170at 1171.063 kb on - strand, within BBR_RS15170at 1171.127 kb on + strand, within BBR_RS15170at 1171.184 kb on - strand, within BBR_RS15170at 1171.208 kb on + strand, within BBR_RS15170

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Glycine
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1,168,849 + BBR_RS15160 0.19 +1.1
1,168,891 + BBR_RS15160 0.23 -2.4
1,168,949 - BBR_RS15160 0.28 -1.4
1,168,949 - BBR_RS15160 0.28 +1.2
1,168,972 + BBR_RS15160 0.30 -1.5
1,169,049 + BBR_RS15160 0.36 +1.0
1,169,092 + BBR_RS15160 0.40 +3.3
1,169,142 + BBR_RS15160 0.44 -1.2
1,169,165 - BBR_RS15160 0.46 -0.8
1,169,331 + BBR_RS15160 0.60 +1.6
1,169,354 - BBR_RS15160 0.62 +0.3
1,169,355 + BBR_RS15160 0.62 -2.0
1,169,355 + BBR_RS15160 0.62 -1.4
1,169,405 + BBR_RS15160 0.66 -1.4
1,169,405 + BBR_RS15160 0.66 -2.0
1,169,405 + BBR_RS15160 0.66 +4.7
1,169,567 + BBR_RS15160 0.80 +2.5
1,169,589 + BBR_RS15160 0.82 -0.2
1,169,613 + BBR_RS15160 0.84 +1.1
1,170,296 + -2.0
1,170,321 - -1.4
1,170,366 + +1.3
1,170,374 - -0.8
1,170,392 - +0.8
1,170,521 + BBR_RS15170 0.10 -1.6
1,170,534 - BBR_RS15170 0.11 -1.4
1,170,645 + BBR_RS15170 0.19 +0.5
1,170,653 + BBR_RS15170 0.20 -2.3
1,170,653 + BBR_RS15170 0.20 -1.2
1,170,670 + BBR_RS15170 0.21 -2.3
1,170,670 + BBR_RS15170 0.21 -3.0
1,170,686 + BBR_RS15170 0.22 -0.5
1,170,689 + BBR_RS15170 0.22 -1.9
1,170,709 - BBR_RS15170 0.24 -0.8
1,170,716 - BBR_RS15170 0.24 -2.3
1,170,718 + BBR_RS15170 0.24 +0.9
1,170,746 - BBR_RS15170 0.26 -3.5
1,170,759 + BBR_RS15170 0.27 +2.1
1,170,826 - BBR_RS15170 0.32 -1.4
1,170,858 - BBR_RS15170 0.34 -2.2
1,170,873 - BBR_RS15170 0.35 +0.8
1,170,913 - BBR_RS15170 0.38 -0.8
1,170,922 - BBR_RS15170 0.38 -1.0
1,170,949 + BBR_RS15170 0.40 -0.8
1,170,953 - BBR_RS15170 0.41 -0.9
1,170,964 + BBR_RS15170 0.41 -0.8
1,170,964 + BBR_RS15170 0.41 +0.3
1,170,964 + BBR_RS15170 0.41 -1.4
1,170,972 - BBR_RS15170 0.42 +2.5
1,171,055 + BBR_RS15170 0.48 -0.7
1,171,055 + BBR_RS15170 0.48 -0.3
1,171,063 - BBR_RS15170 0.48 -1.3
1,171,127 + BBR_RS15170 0.53 -1.7
1,171,184 - BBR_RS15170 0.57 -2.2
1,171,208 + BBR_RS15170 0.58 -1.0

Or see this region's nucleotide sequence