Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12710

Experiment: CDM1 without Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12705 and BBR_RS12710 are separated by 8 nucleotidesBBR_RS12710 and BBR_RS12715 are separated by 482 nucleotides BBR_RS12705: BBR_RS12705 - hypothetical protein, at 605,361 to 606,662 _RS12705 BBR_RS12710: BBR_RS12710 - hypothetical protein, at 606,671 to 606,916 _RS12710 BBR_RS12715: BBR_RS12715 - helix-turn-helix domain-containing protein, at 607,399 to 607,782 _RS12715 Position (kb) 606 607Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 605.685 kb on + strand, within BBR_RS12705at 605.704 kb on + strand, within BBR_RS12705at 605.734 kb on - strand, within BBR_RS12705at 605.736 kb on + strand, within BBR_RS12705at 605.754 kb on - strand, within BBR_RS12705at 605.764 kb on - strand, within BBR_RS12705at 605.807 kb on - strand, within BBR_RS12705at 605.823 kb on - strand, within BBR_RS12705at 605.844 kb on - strand, within BBR_RS12705at 605.875 kb on - strand, within BBR_RS12705at 605.926 kb on - strand, within BBR_RS12705at 605.935 kb on - strand, within BBR_RS12705at 605.962 kb on + strand, within BBR_RS12705at 605.962 kb on + strand, within BBR_RS12705at 605.964 kb on + strand, within BBR_RS12705at 605.970 kb on - strand, within BBR_RS12705at 605.970 kb on - strand, within BBR_RS12705at 605.970 kb on - strand, within BBR_RS12705at 605.970 kb on - strand, within BBR_RS12705at 605.970 kb on - strand, within BBR_RS12705at 605.970 kb on - strand, within BBR_RS12705at 605.972 kb on - strand, within BBR_RS12705at 605.989 kb on - strand, within BBR_RS12705at 606.024 kb on - strand, within BBR_RS12705at 606.095 kb on - strand, within BBR_RS12705at 606.101 kb on - strand, within BBR_RS12705at 606.122 kb on + strand, within BBR_RS12705at 606.186 kb on + strand, within BBR_RS12705at 606.201 kb on + strand, within BBR_RS12705at 606.206 kb on + strand, within BBR_RS12705at 606.206 kb on + strand, within BBR_RS12705at 606.208 kb on + strand, within BBR_RS12705at 606.208 kb on + strand, within BBR_RS12705at 606.212 kb on - strand, within BBR_RS12705at 606.214 kb on - strand, within BBR_RS12705at 606.216 kb on - strand, within BBR_RS12705at 606.255 kb on + strand, within BBR_RS12705at 606.299 kb on - strand, within BBR_RS12705at 606.310 kb on - strand, within BBR_RS12705at 606.311 kb on - strand, within BBR_RS12705at 606.320 kb on - strand, within BBR_RS12705at 606.357 kb on - strand, within BBR_RS12705at 606.357 kb on - strand, within BBR_RS12705at 606.360 kb on - strand, within BBR_RS12705at 606.388 kb on + strand, within BBR_RS12705at 606.393 kb on + strand, within BBR_RS12705at 606.396 kb on - strand, within BBR_RS12705at 606.408 kb on + strand, within BBR_RS12705at 606.413 kb on - strand, within BBR_RS12705at 606.422 kb on + strand, within BBR_RS12705at 606.439 kb on + strand, within BBR_RS12705at 606.439 kb on + strand, within BBR_RS12705at 606.439 kb on + strand, within BBR_RS12705at 606.439 kb on + strand, within BBR_RS12705at 606.439 kb on + strand, within BBR_RS12705at 606.439 kb on + strand, within BBR_RS12705at 606.439 kb on + strand, within BBR_RS12705at 606.447 kb on - strand, within BBR_RS12705at 606.447 kb on - strand, within BBR_RS12705at 606.447 kb on - strand, within BBR_RS12705at 606.447 kb on - strand, within BBR_RS12705at 606.486 kb on + strand, within BBR_RS12705at 606.486 kb on + strand, within BBR_RS12705at 606.486 kb on + strand, within BBR_RS12705at 606.486 kb on + strand, within BBR_RS12705at 606.486 kb on + strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.494 kb on - strand, within BBR_RS12705at 606.505 kb on + strand, within BBR_RS12705at 606.597 kb on + strandat 606.597 kb on + strandat 606.602 kb on + strandat 606.668 kb on + strandat 606.668 kb on + strandat 606.784 kb on + strand, within BBR_RS12710at 606.790 kb on + strand, within BBR_RS12710at 606.790 kb on + strand, within BBR_RS12710at 606.794 kb on - strand, within BBR_RS12710at 606.799 kb on - strand, within BBR_RS12710at 606.800 kb on + strand, within BBR_RS12710at 606.808 kb on - strand, within BBR_RS12710at 606.866 kb on + strand, within BBR_RS12710at 606.874 kb on - strand, within BBR_RS12710at 606.889 kb on + strand, within BBR_RS12710at 606.902 kb on - strandat 606.902 kb on - strandat 606.923 kb on + strandat 606.963 kb on + strandat 606.971 kb on - strandat 606.972 kb on - strandat 607.017 kb on + strandat 607.025 kb on - strandat 607.084 kb on - strandat 607.085 kb on + strandat 607.108 kb on - strandat 607.117 kb on - strandat 607.123 kb on + strandat 607.123 kb on + strandat 607.123 kb on + strandat 607.123 kb on + strandat 607.131 kb on - strandat 607.145 kb on + strandat 607.147 kb on + strandat 607.179 kb on + strandat 607.211 kb on - strandat 607.216 kb on + strandat 607.224 kb on - strandat 607.229 kb on - strandat 607.256 kb on + strandat 607.256 kb on + strandat 607.305 kb on - strandat 607.310 kb on + strandat 607.401 kb on + strandat 607.401 kb on + strandat 607.409 kb on - strandat 607.432 kb on - strandat 607.437 kb on - strandat 607.437 kb on - strandat 607.442 kb on - strand, within BBR_RS12715at 607.456 kb on - strand, within BBR_RS12715at 607.468 kb on - strand, within BBR_RS12715at 607.518 kb on + strand, within BBR_RS12715at 607.540 kb on + strand, within BBR_RS12715at 607.543 kb on + strand, within BBR_RS12715at 607.577 kb on + strand, within BBR_RS12715at 607.577 kb on + strand, within BBR_RS12715at 607.597 kb on + strand, within BBR_RS12715at 607.600 kb on - strand, within BBR_RS12715at 607.600 kb on - strand, within BBR_RS12715at 607.640 kb on + strand, within BBR_RS12715at 607.653 kb on - strand, within BBR_RS12715at 607.668 kb on + strand, within BBR_RS12715at 607.676 kb on - strand, within BBR_RS12715at 607.759 kb on - strandat 607.791 kb on + strandat 607.800 kb on - strandat 607.818 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Glycine
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605,685 + BBR_RS12705 0.25 -2.5
605,704 + BBR_RS12705 0.26 -0.5
605,734 - BBR_RS12705 0.29 -0.5
605,736 + BBR_RS12705 0.29 -1.5
605,754 - BBR_RS12705 0.30 -2.4
605,764 - BBR_RS12705 0.31 -1.0
605,807 - BBR_RS12705 0.34 -2.1
605,823 - BBR_RS12705 0.35 -2.7
605,844 - BBR_RS12705 0.37 +2.2
605,875 - BBR_RS12705 0.39 +3.6
605,926 - BBR_RS12705 0.43 +2.0
605,935 - BBR_RS12705 0.44 -2.6
605,962 + BBR_RS12705 0.46 -1.7
605,962 + BBR_RS12705 0.46 -1.2
605,964 + BBR_RS12705 0.46 -2.1
605,970 - BBR_RS12705 0.47 -2.7
605,970 - BBR_RS12705 0.47 +1.2
605,970 - BBR_RS12705 0.47 +0.2
605,970 - BBR_RS12705 0.47 -1.0
605,970 - BBR_RS12705 0.47 -2.5
605,970 - BBR_RS12705 0.47 -1.6
605,972 - BBR_RS12705 0.47 -1.4
605,989 - BBR_RS12705 0.48 -2.4
606,024 - BBR_RS12705 0.51 -2.5
606,095 - BBR_RS12705 0.56 +3.2
606,101 - BBR_RS12705 0.57 -3.2
606,122 + BBR_RS12705 0.58 -1.1
606,186 + BBR_RS12705 0.63 -1.7
606,201 + BBR_RS12705 0.65 +1.0
606,206 + BBR_RS12705 0.65 +1.1
606,206 + BBR_RS12705 0.65 -1.7
606,208 + BBR_RS12705 0.65 -0.4
606,208 + BBR_RS12705 0.65 -2.3
606,212 - BBR_RS12705 0.65 +1.7
606,214 - BBR_RS12705 0.66 -1.1
606,216 - BBR_RS12705 0.66 +0.3
606,255 + BBR_RS12705 0.69 +0.8
606,299 - BBR_RS12705 0.72 -3.3
606,310 - BBR_RS12705 0.73 -1.7
606,311 - BBR_RS12705 0.73 +0.5
606,320 - BBR_RS12705 0.74 -0.8
606,357 - BBR_RS12705 0.76 -1.1
606,357 - BBR_RS12705 0.76 -1.9
606,360 - BBR_RS12705 0.77 -2.3
606,388 + BBR_RS12705 0.79 -1.3
606,393 + BBR_RS12705 0.79 -1.1
606,396 - BBR_RS12705 0.79 +1.7
606,408 + BBR_RS12705 0.80 +0.1
606,413 - BBR_RS12705 0.81 +1.3
606,422 + BBR_RS12705 0.81 -2.2
606,439 + BBR_RS12705 0.83 -2.3
606,439 + BBR_RS12705 0.83 -1.4
606,439 + BBR_RS12705 0.83 -2.5
606,439 + BBR_RS12705 0.83 +0.6
606,439 + BBR_RS12705 0.83 +1.9
606,439 + BBR_RS12705 0.83 -3.5
606,439 + BBR_RS12705 0.83 +1.6
606,447 - BBR_RS12705 0.83 -0.3
606,447 - BBR_RS12705 0.83 -1.0
606,447 - BBR_RS12705 0.83 -0.8
606,447 - BBR_RS12705 0.83 -1.2
606,486 + BBR_RS12705 0.86 -2.1
606,486 + BBR_RS12705 0.86 -2.4
606,486 + BBR_RS12705 0.86 -1.1
606,486 + BBR_RS12705 0.86 -3.2
606,486 + BBR_RS12705 0.86 -2.9
606,494 - BBR_RS12705 0.87 -2.0
606,494 - BBR_RS12705 0.87 +0.4
606,494 - BBR_RS12705 0.87 -1.4
606,494 - BBR_RS12705 0.87 -0.4
606,494 - BBR_RS12705 0.87 -1.4
606,494 - BBR_RS12705 0.87 -0.6
606,494 - BBR_RS12705 0.87 -1.5
606,494 - BBR_RS12705 0.87 -0.1
606,494 - BBR_RS12705 0.87 -2.5
606,505 + BBR_RS12705 0.88 +3.1
606,597 + -2.0
606,597 + +0.2
606,602 + +0.1
606,668 + -1.5
606,668 + -0.4
606,784 + BBR_RS12710 0.46 +0.8
606,790 + BBR_RS12710 0.48 -2.7
606,790 + BBR_RS12710 0.48 -2.0
606,794 - BBR_RS12710 0.50 -1.1
606,799 - BBR_RS12710 0.52 +0.2
606,800 + BBR_RS12710 0.52 -1.7
606,808 - BBR_RS12710 0.56 -2.2
606,866 + BBR_RS12710 0.79 +0.2
606,874 - BBR_RS12710 0.83 -1.2
606,889 + BBR_RS12710 0.89 -2.1
606,902 - -2.5
606,902 - -0.1
606,923 + -1.6
606,963 + -1.2
606,971 - -1.7
606,972 - -0.4
607,017 + -2.6
607,025 - +1.2
607,084 - -2.0
607,085 + +1.2
607,108 - -1.4
607,117 - -1.3
607,123 + -1.8
607,123 + -1.7
607,123 + -1.0
607,123 + -1.5
607,131 - +0.8
607,145 + +1.8
607,147 + -1.9
607,179 + -0.6
607,211 - -0.6
607,216 + -0.2
607,224 - -1.6
607,229 - +2.9
607,256 + +1.4
607,256 + +0.4
607,305 - +2.5
607,310 + -0.3
607,401 + -1.1
607,401 + +0.7
607,409 - +0.9
607,432 - +1.4
607,437 - +3.5
607,437 - +2.2
607,442 - BBR_RS12715 0.11 -3.7
607,456 - BBR_RS12715 0.15 -1.6
607,468 - BBR_RS12715 0.18 -2.1
607,518 + BBR_RS12715 0.31 -0.2
607,540 + BBR_RS12715 0.37 +0.0
607,543 + BBR_RS12715 0.38 +1.7
607,577 + BBR_RS12715 0.46 +2.9
607,577 + BBR_RS12715 0.46 -1.9
607,597 + BBR_RS12715 0.52 +2.1
607,600 - BBR_RS12715 0.52 +2.4
607,600 - BBR_RS12715 0.52 -2.1
607,640 + BBR_RS12715 0.63 -1.6
607,653 - BBR_RS12715 0.66 +3.8
607,668 + BBR_RS12715 0.70 -1.2
607,676 - BBR_RS12715 0.72 -0.6
607,759 - +0.9
607,791 + -0.8
607,800 - +3.1
607,818 + -2.9

Or see this region's nucleotide sequence