Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12030

Experiment: CDM1 without Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12025 and BBR_RS12030 overlap by 1 nucleotidesBBR_RS12030 and BBR_RS12035 are separated by 83 nucleotidesBBR_RS12035 and BBR_RS12040 are separated by 47 nucleotides BBR_RS12025: BBR_RS12025 - F0F1 ATP synthase subunit beta, at 448,214 to 449,686 _RS12025 BBR_RS12030: BBR_RS12030 - F0F1 ATP synthase subunit epsilon, at 449,686 to 449,979 _RS12030 BBR_RS12035: BBR_RS12035 - endonuclease NucS, at 450,063 to 450,767 _RS12035 BBR_RS12040: BBR_RS12040 - peptidyl-prolyl cis-trans isomerase, at 450,815 to 451,768 _RS12040 Position (kb) 449 450Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 449.942 kb on - strand, within BBR_RS12030at 449.945 kb on + strand, within BBR_RS12030at 449.945 kb on + strand, within BBR_RS12030at 449.959 kb on - strandat 449.969 kb on + strandat 449.969 kb on - strandat 449.977 kb on - strandat 449.977 kb on - strandat 449.978 kb on + strandat 449.979 kb on - strandat 449.988 kb on + strandat 449.988 kb on + strandat 449.988 kb on + strandat 449.988 kb on + strandat 449.988 kb on + strandat 449.996 kb on - strandat 449.996 kb on - strandat 449.996 kb on - strandat 450.019 kb on + strandat 450.040 kb on + strandat 450.040 kb on + strandat 450.048 kb on + strandat 450.053 kb on + strandat 450.053 kb on + strandat 450.053 kb on + strandat 450.061 kb on - strandat 450.061 kb on - strandat 450.061 kb on - strandat 450.085 kb on + strandat 450.090 kb on + strandat 450.090 kb on + strandat 450.097 kb on + strandat 450.115 kb on - strandat 450.128 kb on + strandat 450.141 kb on - strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.190 kb on + strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.198 kb on - strand, within BBR_RS12035at 450.228 kb on + strand, within BBR_RS12035at 450.228 kb on + strand, within BBR_RS12035at 450.236 kb on - strand, within BBR_RS12035at 450.236 kb on - strand, within BBR_RS12035at 450.244 kb on - strand, within BBR_RS12035at 450.250 kb on - strand, within BBR_RS12035at 450.261 kb on + strand, within BBR_RS12035at 450.264 kb on + strand, within BBR_RS12035at 450.266 kb on + strand, within BBR_RS12035at 450.266 kb on + strand, within BBR_RS12035at 450.266 kb on + strand, within BBR_RS12035at 450.286 kb on - strand, within BBR_RS12035at 450.311 kb on + strand, within BBR_RS12035at 450.311 kb on + strand, within BBR_RS12035at 450.313 kb on + strand, within BBR_RS12035at 450.320 kb on - strand, within BBR_RS12035at 450.344 kb on + strand, within BBR_RS12035at 450.344 kb on + strand, within BBR_RS12035at 450.344 kb on + strand, within BBR_RS12035at 450.349 kb on + strand, within BBR_RS12035at 450.349 kb on + strand, within BBR_RS12035at 450.352 kb on - strand, within BBR_RS12035at 450.361 kb on + strand, within BBR_RS12035at 450.379 kb on + strand, within BBR_RS12035at 450.387 kb on - strand, within BBR_RS12035at 450.389 kb on + strand, within BBR_RS12035at 450.389 kb on + strand, within BBR_RS12035at 450.397 kb on - strand, within BBR_RS12035at 450.397 kb on - strand, within BBR_RS12035at 450.402 kb on + strand, within BBR_RS12035at 450.408 kb on - strand, within BBR_RS12035at 450.408 kb on - strand, within BBR_RS12035at 450.419 kb on + strand, within BBR_RS12035at 450.437 kb on + strand, within BBR_RS12035at 450.445 kb on - strand, within BBR_RS12035at 450.470 kb on - strand, within BBR_RS12035at 450.504 kb on - strand, within BBR_RS12035at 450.514 kb on - strand, within BBR_RS12035at 450.525 kb on - strand, within BBR_RS12035at 450.536 kb on - strand, within BBR_RS12035at 450.536 kb on - strand, within BBR_RS12035at 450.582 kb on - strand, within BBR_RS12035at 450.629 kb on - strand, within BBR_RS12035at 450.641 kb on - strand, within BBR_RS12035at 450.651 kb on + strand, within BBR_RS12035at 450.656 kb on + strand, within BBR_RS12035at 450.658 kb on + strand, within BBR_RS12035at 450.658 kb on + strand, within BBR_RS12035at 450.659 kb on - strand, within BBR_RS12035at 450.659 kb on - strand, within BBR_RS12035at 450.659 kb on - strand, within BBR_RS12035at 450.659 kb on - strand, within BBR_RS12035at 450.696 kb on + strand, within BBR_RS12035at 450.696 kb on + strand, within BBR_RS12035at 450.698 kb on - strandat 450.706 kb on + strandat 450.736 kb on - strandat 450.736 kb on - strandat 450.739 kb on - strandat 450.739 kb on - strandat 450.744 kb on + strandat 450.751 kb on + strandat 450.758 kb on - strandat 450.758 kb on - strandat 450.761 kb on + strandat 450.773 kb on + strandat 450.819 kb on - strandat 450.821 kb on - strandat 450.888 kb on + strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.901 kb on - strandat 450.952 kb on - strand, within BBR_RS12040at 450.963 kb on - strand, within BBR_RS12040at 450.975 kb on - strand, within BBR_RS12040at 450.975 kb on - strand, within BBR_RS12040

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Glycine
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449,942 - BBR_RS12030 0.87 +3.3
449,945 + BBR_RS12030 0.88 -3.4
449,945 + BBR_RS12030 0.88 +3.2
449,959 - +2.1
449,969 + +2.1
449,969 - -1.0
449,977 - -1.1
449,977 - -1.5
449,978 + -0.4
449,979 - +1.8
449,988 + +3.3
449,988 + -1.3
449,988 + +1.4
449,988 + +1.3
449,988 + +1.8
449,996 - +0.5
449,996 - -1.5
449,996 - -1.0
450,019 + -1.2
450,040 + -1.8
450,040 + +3.5
450,048 + +2.9
450,053 + -3.3
450,053 + +1.6
450,053 + +0.4
450,061 - +0.8
450,061 - -2.9
450,061 - +0.1
450,085 + +0.5
450,090 + +1.9
450,090 + -0.4
450,097 + -1.6
450,115 - -2.3
450,128 + -1.7
450,141 - BBR_RS12035 0.11 -0.7
450,190 + BBR_RS12035 0.18 +4.5
450,190 + BBR_RS12035 0.18 +3.5
450,190 + BBR_RS12035 0.18 +1.6
450,190 + BBR_RS12035 0.18 -0.4
450,190 + BBR_RS12035 0.18 -0.8
450,198 - BBR_RS12035 0.19 +2.2
450,198 - BBR_RS12035 0.19 +0.1
450,198 - BBR_RS12035 0.19 +2.7
450,198 - BBR_RS12035 0.19 +2.1
450,198 - BBR_RS12035 0.19 -0.9
450,198 - BBR_RS12035 0.19 +0.3
450,228 + BBR_RS12035 0.23 +3.1
450,228 + BBR_RS12035 0.23 +0.0
450,236 - BBR_RS12035 0.25 +1.9
450,236 - BBR_RS12035 0.25 +1.9
450,244 - BBR_RS12035 0.26 +2.8
450,250 - BBR_RS12035 0.27 +0.9
450,261 + BBR_RS12035 0.28 +1.7
450,264 + BBR_RS12035 0.29 +0.5
450,266 + BBR_RS12035 0.29 +2.5
450,266 + BBR_RS12035 0.29 +2.1
450,266 + BBR_RS12035 0.29 -0.3
450,286 - BBR_RS12035 0.32 -1.5
450,311 + BBR_RS12035 0.35 +1.0
450,311 + BBR_RS12035 0.35 +2.6
450,313 + BBR_RS12035 0.35 +3.3
450,320 - BBR_RS12035 0.36 -1.3
450,344 + BBR_RS12035 0.40 +1.9
450,344 + BBR_RS12035 0.40 +1.8
450,344 + BBR_RS12035 0.40 -1.8
450,349 + BBR_RS12035 0.41 -2.1
450,349 + BBR_RS12035 0.41 -0.1
450,352 - BBR_RS12035 0.41 +1.3
450,361 + BBR_RS12035 0.42 -0.4
450,379 + BBR_RS12035 0.45 +2.7
450,387 - BBR_RS12035 0.46 +2.6
450,389 + BBR_RS12035 0.46 +1.7
450,389 + BBR_RS12035 0.46 -1.3
450,397 - BBR_RS12035 0.47 -1.7
450,397 - BBR_RS12035 0.47 -0.8
450,402 + BBR_RS12035 0.48 -1.3
450,408 - BBR_RS12035 0.49 -0.7
450,408 - BBR_RS12035 0.49 -2.4
450,419 + BBR_RS12035 0.50 +3.3
450,437 + BBR_RS12035 0.53 +1.6
450,445 - BBR_RS12035 0.54 +2.1
450,470 - BBR_RS12035 0.58 +2.3
450,504 - BBR_RS12035 0.63 +3.2
450,514 - BBR_RS12035 0.64 -1.1
450,525 - BBR_RS12035 0.66 +1.9
450,536 - BBR_RS12035 0.67 -2.2
450,536 - BBR_RS12035 0.67 -1.4
450,582 - BBR_RS12035 0.74 -1.4
450,629 - BBR_RS12035 0.80 -2.3
450,641 - BBR_RS12035 0.82 -1.9
450,651 + BBR_RS12035 0.83 -1.9
450,656 + BBR_RS12035 0.84 -0.0
450,658 + BBR_RS12035 0.84 -0.8
450,658 + BBR_RS12035 0.84 -0.7
450,659 - BBR_RS12035 0.85 -0.2
450,659 - BBR_RS12035 0.85 -1.3
450,659 - BBR_RS12035 0.85 -0.7
450,659 - BBR_RS12035 0.85 -0.5
450,696 + BBR_RS12035 0.90 -0.9
450,696 + BBR_RS12035 0.90 +2.2
450,698 - -1.6
450,706 + -0.7
450,736 - +1.1
450,736 - +0.2
450,739 - +1.6
450,739 - +0.6
450,744 + +2.0
450,751 + +0.2
450,758 - +0.0
450,758 - -1.5
450,761 + +0.6
450,773 + -2.8
450,819 - +1.1
450,821 - +1.7
450,888 + +1.2
450,901 - +2.2
450,901 - +3.7
450,901 - +2.3
450,901 - +2.1
450,901 - +0.5
450,901 - -3.8
450,952 - BBR_RS12040 0.14 +2.3
450,963 - BBR_RS12040 0.16 -1.1
450,975 - BBR_RS12040 0.17 +1.3
450,975 - BBR_RS12040 0.17 +1.3

Or see this region's nucleotide sequence