Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04881 and SMc04408 overlap by 4 nucleotides SMc04408 and SMc04409 are separated by 128 nucleotides SMc04409 and SMc04410 are separated by 113 nucleotides SMc04410 and SMc04411 are separated by 172 nucleotides
SMc04881: SMc04881 - virulence associated protein, at 3,616,239 to 3,616,643
SMc04881
SMc04408: SMc04408 - virulence-associated protein, at 3,616,640 to 3,616,900
SMc04408
SMc04409: SMc04409 - hypothetical protein, at 3,617,029 to 3,617,199
SMc04409
SMc04410: SMc04410 - aspartate-semialdehyde dehydrogenase, at 3,617,313 to 3,618,347
SMc04410
SMc04411: SMc04411 - membrane-bound lytic murein transglycosylase signal peptide protein, at 3,618,520 to 3,619,341
SMc04411
Position (kb)
3617
3618
3619 Strain fitness (log2 ratio)
-1
0
1 at 3616.352 kb on - strand, within SMc04881 at 3616.352 kb on - strand, within SMc04881 at 3616.519 kb on + strand, within SMc04881 at 3616.566 kb on + strand, within SMc04881 at 3616.566 kb on + strand, within SMc04881 at 3616.566 kb on + strand, within SMc04881 at 3616.567 kb on - strand, within SMc04881 at 3616.631 kb on + strand at 3616.923 kb on - strand at 3617.307 kb on + strand at 3618.390 kb on + strand at 3618.519 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 3,616,352 - SMc04881 0.28 -0.1 3,616,352 - SMc04881 0.28 +0.0 3,616,519 + SMc04881 0.69 +0.7 3,616,566 + SMc04881 0.81 +0.3 3,616,566 + SMc04881 0.81 -0.6 3,616,566 + SMc04881 0.81 -0.0 3,616,567 - SMc04881 0.81 -1.2 3,616,631 + +0.1 3,616,923 - +0.1 3,617,307 + -0.7 3,618,390 + +0.1 3,618,519 + -1.0
Or see this region's nucleotide sequence