Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03883 and SMc03884 are separated by 150 nucleotides SMc03884 and SMc03885 are separated by 4 nucleotides
SMc03883: SMc03883 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,549,686 to 3,550,474
SMc03883
SMc03884: SMc03884 - geranyltranstransferase, at 3,550,625 to 3,551,539
SMc03884
SMc03885: SMc03885 - histidinol-phosphate aminotransferase, at 3,551,544 to 3,552,599
SMc03885
Position (kb)
3550
3551
3552 Strain fitness (log2 ratio)
-1
0
1
2 at 3549.687 kb on + strand at 3549.687 kb on + strand at 3549.688 kb on - strand at 3549.688 kb on - strand at 3549.693 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.706 kb on + strand at 3549.707 kb on - strand at 3549.707 kb on - strand at 3549.707 kb on - strand at 3549.707 kb on - strand at 3549.891 kb on + strand, within SMc03883 at 3549.891 kb on + strand, within SMc03883 at 3549.892 kb on - strand, within SMc03883 at 3549.892 kb on - strand, within SMc03883 at 3549.893 kb on + strand, within SMc03883 at 3549.893 kb on + strand, within SMc03883 at 3549.894 kb on - strand, within SMc03883 at 3549.894 kb on - strand, within SMc03883 at 3549.980 kb on + strand, within SMc03883 at 3549.980 kb on + strand, within SMc03883 at 3550.218 kb on + strand, within SMc03883 at 3550.284 kb on + strand, within SMc03883 at 3550.302 kb on + strand, within SMc03883 at 3550.303 kb on - strand, within SMc03883 at 3550.487 kb on - strand at 3550.624 kb on + strand at 3551.586 kb on + strand at 3551.586 kb on + strand at 3551.855 kb on - strand, within SMc03885 at 3551.884 kb on - strand, within SMc03885 at 3551.893 kb on - strand, within SMc03885 at 3551.893 kb on - strand, within SMc03885 at 3551.893 kb on - strand, within SMc03885 at 3552.093 kb on + strand, within SMc03885 at 3552.093 kb on + strand, within SMc03885 at 3552.093 kb on + strand, within SMc03885 at 3552.093 kb on + strand, within SMc03885 at 3552.094 kb on - strand, within SMc03885 at 3552.094 kb on - strand, within SMc03885 at 3552.094 kb on - strand, within SMc03885 at 3552.095 kb on + strand, within SMc03885 at 3552.139 kb on - strand, within SMc03885
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 3,549,687 + +0.2 3,549,687 + -0.5 3,549,688 - -0.1 3,549,688 - -0.3 3,549,693 + -0.6 3,549,706 + -0.2 3,549,706 + -0.7 3,549,706 + -0.6 3,549,706 + -0.6 3,549,706 + -0.4 3,549,706 + -1.2 3,549,706 + +0.1 3,549,706 + -0.8 3,549,707 - -1.4 3,549,707 - -0.7 3,549,707 - +0.0 3,549,707 - -0.7 3,549,891 + SMc03883 0.26 -0.8 3,549,891 + SMc03883 0.26 -0.4 3,549,892 - SMc03883 0.26 +0.5 3,549,892 - SMc03883 0.26 -1.4 3,549,893 + SMc03883 0.26 -0.0 3,549,893 + SMc03883 0.26 +1.4 3,549,894 - SMc03883 0.26 -0.2 3,549,894 - SMc03883 0.26 +0.1 3,549,980 + SMc03883 0.37 -1.5 3,549,980 + SMc03883 0.37 +0.1 3,550,218 + SMc03883 0.67 +0.6 3,550,284 + SMc03883 0.76 -1.0 3,550,302 + SMc03883 0.78 -0.3 3,550,303 - SMc03883 0.78 +0.6 3,550,487 - -0.3 3,550,624 + +0.1 3,551,586 + -0.6 3,551,586 + -0.4 3,551,855 - SMc03885 0.29 -0.1 3,551,884 - SMc03885 0.32 -1.0 3,551,893 - SMc03885 0.33 +0.4 3,551,893 - SMc03885 0.33 +0.1 3,551,893 - SMc03885 0.33 -0.8 3,552,093 + SMc03885 0.52 -0.4 3,552,093 + SMc03885 0.52 +1.8 3,552,093 + SMc03885 0.52 -0.3 3,552,093 + SMc03885 0.52 -1.2 3,552,094 - SMc03885 0.52 +0.7 3,552,094 - SMc03885 0.52 -0.0 3,552,094 - SMc03885 0.52 +1.9 3,552,095 + SMc03885 0.52 +0.1 3,552,139 - SMc03885 0.56 +0.2
Or see this region's nucleotide sequence