Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03239 and SMc03240 are separated by 157 nucleotides SMc03240 and SMc03241 are separated by 46 nucleotides SMc03241 and SMc03242 are separated by 343 nucleotides
SMc03239: SMc03239 - inorganic pyrophosphatase, at 3,347,734 to 3,348,267
SMc03239
SMc03240: SMc03240 - signal peptide protein, at 3,348,425 to 3,349,027
SMc03240
SMc03241: SMc03241 - hypothetical protein, at 3,349,074 to 3,349,580
SMc03241
SMc03242: SMc03242 - GTP-binding protein, at 3,349,924 to 3,351,750
SMc03242
Position (kb)
3349
3350 Strain fitness (log2 ratio)
-2
-1
0
1 at 3348.402 kb on + strand at 3348.402 kb on + strand at 3348.406 kb on + strand at 3348.407 kb on - strand at 3348.407 kb on - strand at 3348.444 kb on - strand at 3348.449 kb on - strand at 3348.497 kb on + strand, within SMc03240 at 3348.497 kb on + strand, within SMc03240 at 3348.576 kb on + strand, within SMc03240 at 3348.650 kb on + strand, within SMc03240 at 3348.651 kb on - strand, within SMc03240 at 3348.651 kb on - strand, within SMc03240 at 3348.651 kb on - strand, within SMc03240 at 3348.651 kb on - strand, within SMc03240 at 3348.872 kb on + strand, within SMc03240 at 3348.873 kb on - strand, within SMc03240 at 3348.971 kb on + strand at 3348.972 kb on - strand at 3349.169 kb on + strand, within SMc03241 at 3349.170 kb on - strand, within SMc03241 at 3349.170 kb on - strand, within SMc03241 at 3349.170 kb on - strand, within SMc03241 at 3349.297 kb on + strand, within SMc03241 at 3349.298 kb on - strand, within SMc03241 at 3349.298 kb on - strand, within SMc03241 at 3349.298 kb on - strand, within SMc03241 at 3349.299 kb on + strand, within SMc03241 at 3349.300 kb on - strand, within SMc03241 at 3349.300 kb on - strand, within SMc03241 at 3349.300 kb on - strand, within SMc03241 at 3349.300 kb on - strand, within SMc03241 at 3349.490 kb on - strand, within SMc03241 at 3349.594 kb on - strand at 3349.859 kb on - strand at 3349.925 kb on + strand at 3349.925 kb on + strand at 3349.983 kb on - strand at 3350.090 kb on - strand at 3350.199 kb on - strand, within SMc03242 at 3350.325 kb on + strand, within SMc03242 at 3350.337 kb on - strand, within SMc03242
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 3,348,402 + +1.5 3,348,402 + -0.5 3,348,406 + +0.1 3,348,407 - -0.1 3,348,407 - -0.4 3,348,444 - -0.8 3,348,449 - +0.3 3,348,497 + SMc03240 0.12 -0.8 3,348,497 + SMc03240 0.12 +1.0 3,348,576 + SMc03240 0.25 -0.1 3,348,650 + SMc03240 0.37 +0.5 3,348,651 - SMc03240 0.37 -0.3 3,348,651 - SMc03240 0.37 +0.3 3,348,651 - SMc03240 0.37 +0.3 3,348,651 - SMc03240 0.37 +0.1 3,348,872 + SMc03240 0.74 +0.2 3,348,873 - SMc03240 0.74 -0.8 3,348,971 + -0.3 3,348,972 - +0.1 3,349,169 + SMc03241 0.19 -1.9 3,349,170 - SMc03241 0.19 -1.2 3,349,170 - SMc03241 0.19 -0.9 3,349,170 - SMc03241 0.19 -0.8 3,349,297 + SMc03241 0.44 -1.7 3,349,298 - SMc03241 0.44 -0.2 3,349,298 - SMc03241 0.44 +0.2 3,349,298 - SMc03241 0.44 -1.5 3,349,299 + SMc03241 0.44 -0.5 3,349,300 - SMc03241 0.45 -1.9 3,349,300 - SMc03241 0.45 -0.7 3,349,300 - SMc03241 0.45 -1.0 3,349,300 - SMc03241 0.45 -0.2 3,349,490 - SMc03241 0.82 +0.2 3,349,594 - -1.4 3,349,859 - -0.4 3,349,925 + -1.7 3,349,925 + -0.3 3,349,983 - -0.1 3,350,090 - -1.3 3,350,199 - SMc03242 0.15 -1.3 3,350,325 + SMc03242 0.22 -0.8 3,350,337 - SMc03242 0.23 -1.6
Or see this region's nucleotide sequence