Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03030 and SMc03031 are separated by 21 nucleotides SMc03031 and SMc03032 overlap by 4 nucleotides SMc03032 and SMc03033 overlap by 4 nucleotides SMc03033 and SMc03034 overlap by 4 nucleotides
SMc03030: SMc03030 - flagellar basal body rod protein FlgG, at 726,091 to 726,879
SMc03030
SMc03031: SMc03031 - flagellar basal body P-ring biosynthesis protein FlgA, at 726,901 to 727,407
SMc03031
SMc03032: SMc03032 - flagellar basal body P-ring protein, at 727,404 to 728,519
SMc03032
SMc03033: SMc03033 - hypothetical protein, at 728,516 to 729,055
SMc03033
SMc03034: SMc03034 - flagellar basal body L-ring protein, at 729,052 to 729,762
SMc03034
Position (kb) 727
728
729 Strain fitness (log2 ratio) -1
0
1
2 at 726.493 kb on - strand, within SMc03030 at 726.493 kb on - strand, within SMc03030 at 726.742 kb on + strand, within SMc03030 at 726.743 kb on - strand, within SMc03030 at 726.746 kb on + strand, within SMc03030 at 726.780 kb on + strand, within SMc03030 at 726.781 kb on - strand, within SMc03030 at 726.808 kb on + strand at 726.808 kb on + strand at 727.055 kb on - strand, within SMc03031 at 727.220 kb on - strand, within SMc03031 at 727.418 kb on + strand at 727.821 kb on + strand, within SMc03032 at 727.822 kb on - strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.218 kb on + strand, within SMc03032 at 728.219 kb on - strand, within SMc03032 at 728.219 kb on - strand, within SMc03032 at 728.256 kb on + strand, within SMc03032 at 728.257 kb on - strand, within SMc03032 at 728.334 kb on + strand at 728.708 kb on + strand, within SMc03033 at 728.708 kb on + strand, within SMc03033 at 728.709 kb on - strand, within SMc03033 at 728.709 kb on - strand, within SMc03033 at 728.806 kb on + strand, within SMc03033 at 728.807 kb on - strand, within SMc03033 at 728.858 kb on + strand, within SMc03033 at 728.858 kb on + strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.286 kb on - strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.297 kb on - strand, within SMc03034 at 729.297 kb on - strand, within SMc03034
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 726,493 - SMc03030 0.51 -0.3 726,493 - SMc03030 0.51 -0.5 726,742 + SMc03030 0.83 +0.4 726,743 - SMc03030 0.83 +1.8 726,746 + SMc03030 0.83 -1.2 726,780 + SMc03030 0.87 -1.4 726,781 - SMc03030 0.87 +0.1 726,808 + -1.0 726,808 + -0.0 727,055 - SMc03031 0.30 +0.2 727,220 - SMc03031 0.63 +0.2 727,418 + -0.6 727,821 + SMc03032 0.37 -0.3 727,822 - SMc03032 0.37 +0.0 728,040 + SMc03032 0.57 -1.0 728,040 + SMc03032 0.57 -0.2 728,040 + SMc03032 0.57 -1.4 728,040 + SMc03032 0.57 -0.1 728,218 + SMc03032 0.73 -1.1 728,219 - SMc03032 0.73 +0.1 728,219 - SMc03032 0.73 +0.3 728,256 + SMc03032 0.76 -0.6 728,257 - SMc03032 0.76 -0.3 728,334 + -0.1 728,708 + SMc03033 0.36 +0.8 728,708 + SMc03033 0.36 -0.4 728,709 - SMc03033 0.36 -0.1 728,709 - SMc03033 0.36 +0.4 728,806 + SMc03033 0.54 -0.3 728,807 - SMc03033 0.54 -0.7 728,858 + SMc03033 0.63 -0.5 728,858 + SMc03033 0.63 -0.9 728,859 - SMc03033 0.64 +0.0 728,859 - SMc03033 0.64 -0.0 728,859 - SMc03033 0.64 -0.1 728,859 - SMc03033 0.64 +0.4 729,196 + SMc03034 0.20 -0.2 729,196 + SMc03034 0.20 +0.2 729,196 + SMc03034 0.20 -0.8 729,196 + SMc03034 0.20 +0.1 729,197 - SMc03034 0.20 +0.6 729,197 - SMc03034 0.20 -0.7 729,197 - SMc03034 0.20 +0.2 729,197 - SMc03034 0.20 -1.3 729,286 - SMc03034 0.33 +0.1 729,296 + SMc03034 0.34 -1.1 729,296 + SMc03034 0.34 +0.2 729,296 + SMc03034 0.34 -0.1 729,296 + SMc03034 0.34 -1.0 729,297 - SMc03034 0.34 -0.2 729,297 - SMc03034 0.34 +0.5
Or see this region's nucleotide sequence