Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02793 and SMc02792 are separated by 47 nucleotides SMc02792 and SMc02791 overlap by 8 nucleotides
SMc02793: SMc02793 - hypothetical protein, at 478 to 1,299
SMc02793
SMc02792: SMc02792 - Maf-like protein, at 1,347 to 1,946
SMc02792
SMc02791: SMc02791 - shikimate 5-dehydrogenase, at 1,939 to 2,799
SMc02791
Position (kb) 0
1
2 Strain fitness (log2 ratio) -1
0
1
2 at 0.085 kb on - strand at 0.108 kb on - strand at 0.119 kb on - strand at 0.454 kb on + strand at 0.496 kb on + strand at 0.671 kb on + strand, within SMc02793 at 0.676 kb on + strand, within SMc02793 at 0.677 kb on - strand, within SMc02793 at 0.677 kb on - strand, within SMc02793 at 0.677 kb on - strand, within SMc02793 at 0.677 kb on - strand, within SMc02793 at 0.970 kb on + strand, within SMc02793 at 0.988 kb on - strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.074 kb on + strand, within SMc02793 at 1.154 kb on - strand, within SMc02793 at 1.154 kb on - strand, within SMc02793 at 1.156 kb on - strand, within SMc02793 at 1.185 kb on + strand, within SMc02793 at 1.185 kb on + strand, within SMc02793 at 1.186 kb on - strand, within SMc02793 at 1.186 kb on - strand, within SMc02793 at 1.189 kb on + strand, within SMc02793 at 1.189 kb on + strand, within SMc02793 at 1.293 kb on + strand at 1.293 kb on + strand at 1.293 kb on + strand at 1.294 kb on - strand at 1.821 kb on + strand, within SMc02792
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 85 - +0.6 108 - +0.5 119 - +0.0 454 + -1.2 496 + +0.6 671 + SMc02793 0.23 +0.8 676 + SMc02793 0.24 +1.4 677 - SMc02793 0.24 +0.2 677 - SMc02793 0.24 +0.8 677 - SMc02793 0.24 +0.6 677 - SMc02793 0.24 +0.3 970 + SMc02793 0.60 +1.0 988 - SMc02793 0.62 +0.6 1,004 + SMc02793 0.64 +0.8 1,004 + SMc02793 0.64 +1.1 1,004 + SMc02793 0.64 +0.9 1,074 + SMc02793 0.73 +0.0 1,154 - SMc02793 0.82 +0.8 1,154 - SMc02793 0.82 +1.0 1,156 - SMc02793 0.82 +1.0 1,185 + SMc02793 0.86 +0.9 1,185 + SMc02793 0.86 -0.4 1,186 - SMc02793 0.86 +1.0 1,186 - SMc02793 0.86 +0.6 1,189 + SMc02793 0.86 +0.4 1,189 + SMc02793 0.86 +1.1 1,293 + +0.4 1,293 + +1.8 1,293 + +1.4 1,294 - +0.7 1,821 + SMc02792 0.79 +0.1
Or see this region's nucleotide sequence