Strain Fitness in Sinorhizobium meliloti 1021 around SMc02655

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02658 and SMc02657 overlap by 4 nucleotidesSMc02657 and SMc02656 are separated by 131 nucleotidesSMc02656 and SMc02655 are separated by 221 nucleotidesSMc02655 and SMc02654 overlap by 4 nucleotidesSMc02654 and SMc02653 are separated by 159 nucleotides SMc02658: SMc02658 - hypothetical protein, at 1,166,694 to 1,166,927 SMc02658 SMc02657: SMc02657 - hypothetical protein, at 1,166,924 to 1,167,208 SMc02657 SMc02656: SMc02656 - hypothetical protein, at 1,167,340 to 1,167,492 SMc02656 SMc02655: SMc02655 - hypothetical protein, at 1,167,714 to 1,168,358 SMc02655 SMc02654: SMc02654 - 4'-phosphopantetheinyl transferase, at 1,168,355 to 1,168,774 SMc02654 SMc02653: SMc02653 - signal peptidase I transmembrane protein, at 1,168,934 to 1,169,677 SMc02653 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -2 -1 0 1at 1166.759 kb on + strand, within SMc02658at 1166.900 kb on + strand, within SMc02658at 1167.050 kb on + strand, within SMc02657at 1167.050 kb on + strand, within SMc02657at 1167.051 kb on - strand, within SMc02657at 1167.302 kb on + strandat 1167.302 kb on + strandat 1167.302 kb on + strandat 1167.303 kb on - strandat 1167.409 kb on + strand, within SMc02656at 1167.445 kb on + strand, within SMc02656at 1167.445 kb on + strand, within SMc02656at 1167.446 kb on - strand, within SMc02656at 1167.544 kb on + strandat 1167.569 kb on + strandat 1167.569 kb on + strandat 1167.569 kb on + strandat 1167.570 kb on - strandat 1167.603 kb on + strandat 1167.684 kb on + strandat 1167.799 kb on + strand, within SMc02655at 1167.799 kb on + strand, within SMc02655at 1167.891 kb on + strand, within SMc02655at 1168.079 kb on + strand, within SMc02655at 1168.127 kb on + strand, within SMc02655at 1168.270 kb on + strand, within SMc02655at 1168.830 kb on + strandat 1168.830 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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1,166,759 + SMc02658 0.28 -0.7
1,166,900 + SMc02658 0.88 -0.6
1,167,050 + SMc02657 0.44 -0.1
1,167,050 + SMc02657 0.44 +1.3
1,167,051 - SMc02657 0.45 -0.5
1,167,302 + +0.3
1,167,302 + +0.2
1,167,302 + -1.7
1,167,303 - +0.4
1,167,409 + SMc02656 0.45 +0.6
1,167,445 + SMc02656 0.69 -0.2
1,167,445 + SMc02656 0.69 +0.1
1,167,446 - SMc02656 0.69 -0.1
1,167,544 + -0.3
1,167,569 + -0.5
1,167,569 + +0.2
1,167,569 + -0.4
1,167,570 - -1.1
1,167,603 + -0.2
1,167,684 + -0.2
1,167,799 + SMc02655 0.13 -0.8
1,167,799 + SMc02655 0.13 -0.4
1,167,891 + SMc02655 0.27 -2.3
1,168,079 + SMc02655 0.57 +0.0
1,168,127 + SMc02655 0.64 -2.7
1,168,270 + SMc02655 0.86 -1.0
1,168,830 + +0.0
1,168,830 + +0.5
1,168,832 + +0.1
1,168,832 + +0.9
1,168,832 + +0.1
1,168,832 + +0.3
1,168,832 + +0.2
1,168,832 + +0.5
1,168,832 + -0.2
1,168,832 + +0.8

Or see this region's nucleotide sequence