Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02560 and SMc02562 are separated by 341 nucleotides SMc02562 and SMc02563 are separated by 103 nucleotides SMc02563 and SMc02564 are separated by 85 nucleotides
SMc02560: SMc02560 - transcriptional regulator, at 51,419 to 52,141
SMc02560
SMc02562: SMc02562 - phosphoenolpyruvate carboxykinase, at 52,483 to 54,093
SMc02562
SMc02563: SMc02563 - peptidyl-tRNA hydrolase domain-containing protein, at 54,197 to 54,631
SMc02563
SMc02564: SMc02564 - LysM domain/BON superfamily protein, at 54,717 to 55,190
SMc02564
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -1
0
1 at 52.238 kb on - strand at 52.559 kb on - strand at 52.559 kb on - strand at 52.681 kb on + strand, within SMc02562 at 52.681 kb on + strand, within SMc02562 at 52.681 kb on + strand, within SMc02562 at 52.682 kb on - strand, within SMc02562 at 52.682 kb on - strand, within SMc02562 at 52.804 kb on + strand, within SMc02562 at 52.804 kb on + strand, within SMc02562 at 52.804 kb on + strand, within SMc02562 at 52.804 kb on + strand, within SMc02562 at 52.805 kb on - strand, within SMc02562 at 53.058 kb on + strand, within SMc02562 at 53.059 kb on - strand, within SMc02562 at 53.107 kb on + strand, within SMc02562 at 53.303 kb on - strand, within SMc02562 at 53.303 kb on - strand, within SMc02562 at 53.303 kb on - strand, within SMc02562 at 53.303 kb on - strand, within SMc02562 at 53.456 kb on - strand, within SMc02562 at 53.587 kb on + strand, within SMc02562 at 53.587 kb on + strand, within SMc02562 at 53.588 kb on - strand, within SMc02562 at 53.974 kb on + strand at 53.975 kb on - strand at 54.215 kb on + strand at 54.216 kb on - strand at 54.686 kb on + strand at 54.694 kb on - strand at 54.871 kb on + strand, within SMc02564
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 52,238 - +0.5 52,559 - -0.8 52,559 - +0.3 52,681 + SMc02562 0.12 +0.1 52,681 + SMc02562 0.12 +0.3 52,681 + SMc02562 0.12 -0.8 52,682 - SMc02562 0.12 -0.4 52,682 - SMc02562 0.12 -0.0 52,804 + SMc02562 0.20 +0.4 52,804 + SMc02562 0.20 +0.2 52,804 + SMc02562 0.20 +0.7 52,804 + SMc02562 0.20 -0.2 52,805 - SMc02562 0.20 -1.2 53,058 + SMc02562 0.36 -1.1 53,059 - SMc02562 0.36 -0.4 53,107 + SMc02562 0.39 -0.2 53,303 - SMc02562 0.51 -0.1 53,303 - SMc02562 0.51 +0.8 53,303 - SMc02562 0.51 +0.5 53,303 - SMc02562 0.51 +0.9 53,456 - SMc02562 0.60 -0.5 53,587 + SMc02562 0.69 -0.0 53,587 + SMc02562 0.69 -0.3 53,588 - SMc02562 0.69 -1.2 53,974 + -0.9 53,975 - -0.5 54,215 + -0.4 54,216 - +1.1 54,686 + -1.0 54,694 - +0.0 54,871 + SMc02564 0.32 -1.1
Or see this region's nucleotide sequence