Strain Fitness in Sinorhizobium meliloti 1021 around SMc02438

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02437 and SMc02438 are separated by 190 nucleotidesSMc02438 and SMc02439 are separated by 348 nucleotides SMc02437: SMc02437 - phosphoenolpyruvate phosphotransferase PTSP (enzyme I-Ntr) protein, at 2,820,153 to 2,822,420 SMc02437 SMc02438: SMc02438 - aspartate kinase, at 2,822,611 to 2,823,885 SMc02438 SMc02439: SMc02439 - hypothetical protein, at 2,824,234 to 2,824,779 SMc02439 Position (kb) 2822 2823 2824Strain fitness (log2 ratio) -1 0 1 2at 2823.900 kb on - strandat 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.390 kb on + strand, within SMc02439at 2824.390 kb on + strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.408 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.463 kb on - strand, within SMc02439

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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2,823,900 - -0.0
2,824,336 + SMc02439 0.19 +0.2
2,824,336 + SMc02439 0.19 -0.0
2,824,336 + SMc02439 0.19 -0.0
2,824,336 + SMc02439 0.19 +0.1
2,824,337 - SMc02439 0.19 +0.0
2,824,337 - SMc02439 0.19 +0.0
2,824,337 - SMc02439 0.19 +0.2
2,824,390 + SMc02439 0.29 +0.1
2,824,390 + SMc02439 0.29 +2.1
2,824,391 - SMc02439 0.29 +0.7
2,824,391 - SMc02439 0.29 +0.1
2,824,391 - SMc02439 0.29 -0.3
2,824,408 + SMc02439 0.32 -0.2
2,824,462 + SMc02439 0.42 -0.5
2,824,462 + SMc02439 0.42 +0.4
2,824,462 + SMc02439 0.42 -0.4
2,824,463 - SMc02439 0.42 +1.0

Or see this region's nucleotide sequence