Strain Fitness in Sinorhizobium meliloti 1021 around SMc02203

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02184 and SMc02199 are separated by 279 nucleotidesSMc02199 and SMc02203 overlap by 4 nucleotidesSMc02203 and SMc02155 are separated by 158 nucleotides SMc02184: SMc02184 - transcriptional regulator, at 546,632 to 546,901 SMc02184 SMc02199: SMc02199 - hypothetical protein, at 547,181 to 547,675 SMc02199 SMc02203: SMc02203 - hypothetical protein, at 547,672 to 548,811 SMc02203 SMc02155: SMc02155 - hypothetical protein, at 548,970 to 551,798 SMc02155 Position (kb) 547 548 549Strain fitness (log2 ratio) -2 -1 0 1 2at 546.690 kb on + strand, within SMc02184at 546.691 kb on - strand, within SMc02184at 546.735 kb on - strand, within SMc02184at 546.783 kb on + strand, within SMc02184at 546.783 kb on + strand, within SMc02184at 546.784 kb on - strand, within SMc02184at 546.784 kb on - strand, within SMc02184at 546.784 kb on - strand, within SMc02184at 546.895 kb on + strandat 546.895 kb on + strandat 546.895 kb on + strandat 546.895 kb on + strandat 546.895 kb on + strandat 546.896 kb on - strandat 546.896 kb on - strandat 546.896 kb on - strandat 546.899 kb on + strandat 547.051 kb on - strandat 547.051 kb on - strandat 547.051 kb on - strandat 547.151 kb on + strandat 547.151 kb on + strandat 547.152 kb on - strandat 547.152 kb on - strandat 547.222 kb on - strandat 547.222 kb on - strandat 547.225 kb on + strandat 547.225 kb on + strandat 547.225 kb on + strandat 547.226 kb on - strandat 547.232 kb on + strand, within SMc02199at 547.232 kb on + strand, within SMc02199at 547.233 kb on - strand, within SMc02199at 547.233 kb on - strand, within SMc02199at 547.233 kb on - strand, within SMc02199at 547.262 kb on + strand, within SMc02199at 547.262 kb on + strand, within SMc02199at 547.262 kb on + strand, within SMc02199at 547.371 kb on + strand, within SMc02199at 547.372 kb on - strand, within SMc02199at 547.372 kb on - strand, within SMc02199at 547.418 kb on + strand, within SMc02199at 547.418 kb on + strand, within SMc02199at 547.419 kb on - strand, within SMc02199at 547.459 kb on - strand, within SMc02199at 547.465 kb on + strand, within SMc02199at 547.465 kb on + strand, within SMc02199at 547.465 kb on + strand, within SMc02199at 547.466 kb on - strand, within SMc02199at 547.466 kb on - strand, within SMc02199at 547.538 kb on + strand, within SMc02199at 547.538 kb on + strand, within SMc02199at 547.599 kb on + strand, within SMc02199at 547.599 kb on + strand, within SMc02199at 547.599 kb on + strand, within SMc02199at 547.632 kb on + strandat 547.735 kb on + strandat 547.767 kb on + strandat 547.768 kb on - strandat 547.771 kb on + strandat 547.772 kb on - strandat 547.790 kb on + strand, within SMc02203at 547.791 kb on - strand, within SMc02203at 547.791 kb on - strand, within SMc02203at 547.841 kb on + strand, within SMc02203at 547.849 kb on + strand, within SMc02203at 548.097 kb on + strand, within SMc02203at 548.113 kb on + strand, within SMc02203at 548.114 kb on - strand, within SMc02203at 548.114 kb on - strand, within SMc02203at 548.114 kb on - strand, within SMc02203at 548.169 kb on - strand, within SMc02203at 548.263 kb on + strand, within SMc02203at 548.263 kb on + strand, within SMc02203at 548.264 kb on - strand, within SMc02203at 548.310 kb on - strand, within SMc02203at 548.420 kb on + strand, within SMc02203at 548.421 kb on - strand, within SMc02203at 548.564 kb on - strand, within SMc02203at 548.564 kb on - strand, within SMc02203at 548.615 kb on + strand, within SMc02203at 548.674 kb on + strand, within SMc02203at 548.675 kb on - strand, within SMc02203at 548.878 kb on - strandat 548.886 kb on + strandat 548.886 kb on + strandat 548.887 kb on - strandat 548.919 kb on - strandat 549.107 kb on + strandat 549.107 kb on + strandat 549.108 kb on - strandat 549.108 kb on - strandat 549.108 kb on - strandat 549.111 kb on + strandat 549.112 kb on - strandat 549.118 kb on - strandat 549.118 kb on - strandat 549.184 kb on + strandat 549.184 kb on + strandat 549.185 kb on - strandat 549.185 kb on - strandat 549.260 kb on - strand, within SMc02155at 549.532 kb on + strand, within SMc02155at 549.539 kb on - strand, within SMc02155at 549.678 kb on + strand, within SMc02155at 549.782 kb on - strand, within SMc02155

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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546,690 + SMc02184 0.21 +0.9
546,691 - SMc02184 0.22 +0.6
546,735 - SMc02184 0.38 -0.4
546,783 + SMc02184 0.56 +0.3
546,783 + SMc02184 0.56 +1.5
546,784 - SMc02184 0.56 +0.4
546,784 - SMc02184 0.56 -0.2
546,784 - SMc02184 0.56 +1.5
546,895 + -0.1
546,895 + -0.2
546,895 + -0.3
546,895 + -0.1
546,895 + -2.6
546,896 - -0.5
546,896 - -0.2
546,896 - -0.0
546,899 + +0.2
547,051 - -2.1
547,051 - +0.6
547,051 - -0.2
547,151 + -0.4
547,151 + -0.4
547,152 - +2.3
547,152 - +0.8
547,222 - +0.2
547,222 - -0.4
547,225 + +0.6
547,225 + -0.7
547,225 + -0.1
547,226 - -1.1
547,232 + SMc02199 0.10 +0.1
547,232 + SMc02199 0.10 +0.4
547,233 - SMc02199 0.11 +0.3
547,233 - SMc02199 0.11 -0.2
547,233 - SMc02199 0.11 +0.0
547,262 + SMc02199 0.16 +0.3
547,262 + SMc02199 0.16 +0.3
547,262 + SMc02199 0.16 -2.4
547,371 + SMc02199 0.38 -0.5
547,372 - SMc02199 0.39 -0.2
547,372 - SMc02199 0.39 -0.8
547,418 + SMc02199 0.48 -0.3
547,418 + SMc02199 0.48 +0.1
547,419 - SMc02199 0.48 -0.4
547,459 - SMc02199 0.56 -1.6
547,465 + SMc02199 0.57 -0.1
547,465 + SMc02199 0.57 -0.4
547,465 + SMc02199 0.57 -0.1
547,466 - SMc02199 0.58 -0.4
547,466 - SMc02199 0.58 -0.5
547,538 + SMc02199 0.72 -0.9
547,538 + SMc02199 0.72 -0.9
547,599 + SMc02199 0.84 -0.5
547,599 + SMc02199 0.84 +0.1
547,599 + SMc02199 0.84 -0.5
547,632 + +1.4
547,735 + +0.5
547,767 + -0.1
547,768 - -0.2
547,771 + +0.2
547,772 - +0.0
547,790 + SMc02203 0.10 +0.5
547,791 - SMc02203 0.10 -0.8
547,791 - SMc02203 0.10 -0.4
547,841 + SMc02203 0.15 +0.7
547,849 + SMc02203 0.16 +0.4
548,097 + SMc02203 0.37 -1.3
548,113 + SMc02203 0.39 -0.3
548,114 - SMc02203 0.39 +0.0
548,114 - SMc02203 0.39 -0.2
548,114 - SMc02203 0.39 -0.5
548,169 - SMc02203 0.44 +0.2
548,263 + SMc02203 0.52 +0.3
548,263 + SMc02203 0.52 -0.7
548,264 - SMc02203 0.52 +0.4
548,310 - SMc02203 0.56 +0.1
548,420 + SMc02203 0.66 -0.1
548,421 - SMc02203 0.66 +0.4
548,564 - SMc02203 0.78 -0.6
548,564 - SMc02203 0.78 -0.1
548,615 + SMc02203 0.83 -0.7
548,674 + SMc02203 0.88 -1.1
548,675 - SMc02203 0.88 -0.4
548,878 - +0.1
548,886 + +0.3
548,886 + -0.0
548,887 - +0.6
548,919 - -0.6
549,107 + -0.9
549,107 + -1.3
549,108 - -0.1
549,108 - -0.5
549,108 - -1.9
549,111 + -0.8
549,112 - -0.3
549,118 - -0.6
549,118 - -0.8
549,184 + -0.4
549,184 + -0.7
549,185 - -1.1
549,185 - -1.5
549,260 - SMc02155 0.10 -0.5
549,532 + SMc02155 0.20 -1.0
549,539 - SMc02155 0.20 -0.6
549,678 + SMc02155 0.25 -0.8
549,782 - SMc02155 0.29 -1.2

Or see this region's nucleotide sequence