Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02170 and SMc02169 overlap by 1 nucleotides SMc02169 and SMc02167 overlap by 4 nucleotides SMc02167 and SMc02166 are separated by 189 nucleotides
SMc02170: SMc02170 - ABC transporter permease, at 525,199 to 526,281
SMc02170
SMc02169: SMc02169 - ABC transporter ATP-binding protein, at 526,281 to 527,063
SMc02169
SMc02167: SMc02167 - fructose transport system kinase, at 527,060 to 527,680
SMc02167
SMc02166: SMc02166 - dihydroorotase, at 527,870 to 528,913
SMc02166
Position (kb)
526
527
528 Strain fitness (log2 ratio)
-1
0
1 at 525.294 kb on + strand at 525.629 kb on - strand, within SMc02170 at 525.672 kb on + strand, within SMc02170 at 525.824 kb on - strand, within SMc02170 at 525.865 kb on + strand, within SMc02170 at 525.865 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.896 kb on - strand, within SMc02170 at 525.902 kb on - strand, within SMc02170 at 525.902 kb on - strand, within SMc02170 at 525.973 kb on + strand, within SMc02170 at 525.974 kb on - strand, within SMc02170 at 525.974 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 526.065 kb on + strand, within SMc02170 at 526.210 kb on + strand at 526.210 kb on + strand at 526.211 kb on - strand at 526.211 kb on - strand at 526.272 kb on - strand at 526.327 kb on - strand at 526.435 kb on + strand, within SMc02169 at 527.152 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.429 kb on - strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.502 kb on - strand, within SMc02167 at 527.561 kb on + strand, within SMc02167 at 527.574 kb on - strand, within SMc02167 at 527.604 kb on - strand, within SMc02167 at 527.616 kb on + strand, within SMc02167 at 527.617 kb on - strand, within SMc02167 at 527.679 kb on - strand at 527.884 kb on + strand at 527.885 kb on - strand at 527.885 kb on - strand at 527.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 525,294 + +0.2 525,629 - SMc02170 0.40 -0.3 525,672 + SMc02170 0.44 -0.1 525,824 - SMc02170 0.58 +0.4 525,865 + SMc02170 0.61 +0.2 525,865 + SMc02170 0.61 +0.2 525,895 + SMc02170 0.64 +0.8 525,895 + SMc02170 0.64 -0.4 525,895 + SMc02170 0.64 +0.5 525,895 + SMc02170 0.64 -0.6 525,896 - SMc02170 0.64 +0.6 525,902 - SMc02170 0.65 -0.2 525,902 - SMc02170 0.65 +0.3 525,973 + SMc02170 0.71 -0.1 525,974 - SMc02170 0.72 -0.5 525,974 - SMc02170 0.72 +0.8 525,976 - SMc02170 0.72 +0.5 525,976 - SMc02170 0.72 +0.3 525,976 - SMc02170 0.72 -0.3 526,065 + SMc02170 0.80 -0.0 526,210 + -0.7 526,210 + -0.4 526,211 - -0.2 526,211 - -0.3 526,272 - -0.9 526,327 - -0.0 526,435 + SMc02169 0.20 -0.7 527,152 + SMc02167 0.15 -0.1 527,428 + SMc02167 0.59 +0.2 527,428 + SMc02167 0.59 -1.2 527,428 + SMc02167 0.59 -0.3 527,428 + SMc02167 0.59 -0.5 527,429 - SMc02167 0.59 +0.3 527,450 + SMc02167 0.63 +0.8 527,450 + SMc02167 0.63 +1.7 527,450 + SMc02167 0.63 +0.2 527,502 - SMc02167 0.71 -0.1 527,561 + SMc02167 0.81 +0.5 527,574 - SMc02167 0.83 +0.3 527,604 - SMc02167 0.88 +0.1 527,616 + SMc02167 0.90 -0.1 527,617 - SMc02167 0.90 -0.8 527,679 - -0.3 527,884 + +0.8 527,885 - -0.4 527,885 - -0.0 527,887 - +0.0
Or see this region's nucleotide sequence