Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02160 and SMc02159 are separated by 95 nucleotides SMc02159 and SMc02158 overlap by 4 nucleotides SMc02158 and SMc02157 are separated by 7 nucleotides
SMc02160: SMc02160 - ABC transporter permease, at 536,019 to 537,329
SMc02160
SMc02159: SMc02159 - hypothetical protein, at 537,425 to 538,090
SMc02159
SMc02158: SMc02158 - acyltransferase, at 538,087 to 538,698
SMc02158
SMc02157: SMc02157 - hypothetical protein, at 538,706 to 539,647
SMc02157
Position (kb) 537
538
539 Strain fitness (log2 ratio) -1
0
1 at 537.314 kb on + strand at 537.734 kb on + strand, within SMc02159 at 537.735 kb on - strand, within SMc02159 at 537.788 kb on + strand, within SMc02159 at 537.788 kb on + strand, within SMc02159 at 537.848 kb on + strand, within SMc02159 at 537.848 kb on + strand, within SMc02159 at 537.849 kb on - strand, within SMc02159 at 537.992 kb on + strand, within SMc02159 at 538.180 kb on + strand, within SMc02158 at 538.181 kb on - strand, within SMc02158 at 538.279 kb on + strand, within SMc02158 at 538.279 kb on + strand, within SMc02158 at 538.308 kb on + strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.574 kb on + strand, within SMc02158 at 538.729 kb on + strand at 538.846 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.941 kb on - strand, within SMc02157 at 539.012 kb on + strand, within SMc02157 at 539.013 kb on - strand, within SMc02157 at 539.033 kb on + strand, within SMc02157 at 539.057 kb on + strand, within SMc02157 at 539.088 kb on - strand, within SMc02157 at 539.088 kb on - strand, within SMc02157
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 537,314 + +0.0 537,734 + SMc02159 0.46 -0.2 537,735 - SMc02159 0.47 -0.1 537,788 + SMc02159 0.55 +0.1 537,788 + SMc02159 0.55 -0.9 537,848 + SMc02159 0.64 -0.3 537,848 + SMc02159 0.64 -0.8 537,849 - SMc02159 0.64 +0.4 537,992 + SMc02159 0.85 -0.1 538,180 + SMc02158 0.15 -0.2 538,181 - SMc02158 0.15 +0.8 538,279 + SMc02158 0.31 +0.4 538,279 + SMc02158 0.31 +0.8 538,308 + SMc02158 0.36 -0.5 538,309 - SMc02158 0.36 -0.1 538,309 - SMc02158 0.36 -0.5 538,309 - SMc02158 0.36 +0.0 538,574 + SMc02158 0.80 -0.1 538,729 + +0.1 538,846 + SMc02157 0.15 +1.0 538,940 + SMc02157 0.25 +0.1 538,940 + SMc02157 0.25 -0.1 538,940 + SMc02157 0.25 -0.1 538,941 - SMc02157 0.25 -1.5 539,012 + SMc02157 0.32 +0.2 539,013 - SMc02157 0.33 -0.4 539,033 + SMc02157 0.35 +0.3 539,057 + SMc02157 0.37 -0.1 539,088 - SMc02157 0.41 -0.2 539,088 - SMc02157 0.41 -1.2
Or see this region's nucleotide sequence