Strain Fitness in Sinorhizobium meliloti 1021 around SMc02154

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02155 and SMc02154 are separated by 14 nucleotidesSMc02154 and SMc04429 overlap by 4 nucleotidesSMc04429 and SMc02153 are separated by 1 nucleotides SMc02155: SMc02155 - hypothetical protein, at 548,970 to 551,798 SMc02155 SMc02154: SMc02154 - hypothetical protein, at 551,813 to 554,713 SMc02154 SMc04429: SMc04429 - hypothetical protein, at 554,710 to 555,357 SMc04429 SMc02153: SMc02153 - hypothetical protein, at 555,359 to 556,690 SMc02153 Position (kb) 551 552 553 554 555Strain fitness (log2 ratio) -2 -1 0 1 2at 550.819 kb on + strand, within SMc02155at 550.819 kb on + strand, within SMc02155at 550.820 kb on - strand, within SMc02155at 550.822 kb on + strand, within SMc02155at 550.823 kb on - strand, within SMc02155at 550.838 kb on + strand, within SMc02155at 550.870 kb on + strand, within SMc02155at 550.871 kb on - strand, within SMc02155at 550.948 kb on - strand, within SMc02155at 551.277 kb on - strand, within SMc02155at 551.350 kb on - strand, within SMc02155at 551.518 kb on + strandat 551.519 kb on - strandat 551.531 kb on + strandat 551.531 kb on + strandat 551.531 kb on + strandat 551.532 kb on - strandat 551.532 kb on - strandat 551.773 kb on - strandat 551.885 kb on + strandat 551.886 kb on - strandat 551.898 kb on + strandat 551.941 kb on + strandat 551.942 kb on - strandat 551.942 kb on - strandat 551.942 kb on - strandat 552.053 kb on + strandat 552.053 kb on + strandat 552.053 kb on + strandat 552.054 kb on - strandat 552.054 kb on - strandat 552.054 kb on - strandat 552.054 kb on - strandat 552.150 kb on + strand, within SMc02154at 552.151 kb on - strand, within SMc02154at 552.151 kb on - strand, within SMc02154at 552.151 kb on - strand, within SMc02154at 552.244 kb on - strand, within SMc02154at 552.313 kb on + strand, within SMc02154at 552.313 kb on + strand, within SMc02154at 552.313 kb on + strand, within SMc02154at 552.372 kb on + strand, within SMc02154at 552.372 kb on + strand, within SMc02154at 552.373 kb on - strand, within SMc02154at 552.406 kb on + strand, within SMc02154at 552.564 kb on - strand, within SMc02154at 552.564 kb on - strand, within SMc02154at 552.615 kb on - strand, within SMc02154at 552.643 kb on + strand, within SMc02154at 552.697 kb on + strand, within SMc02154at 552.697 kb on + strand, within SMc02154at 552.698 kb on - strand, within SMc02154at 552.742 kb on - strand, within SMc02154at 552.744 kb on + strand, within SMc02154at 552.744 kb on + strand, within SMc02154at 552.744 kb on + strand, within SMc02154at 552.744 kb on + strandat 552.744 kb on + strand, within SMc02154at 552.744 kb on + strand, within SMc02154at 552.745 kb on - strand, within SMc02154at 552.745 kb on - strand, within SMc02154at 552.745 kb on - strand, within SMc02154at 552.745 kb on - strand, within SMc02154at 552.748 kb on + strand, within SMc02154at 552.748 kb on + strand, within SMc02154at 552.749 kb on - strand, within SMc02154at 552.806 kb on - strand, within SMc02154at 552.806 kb on - strand, within SMc02154at 552.822 kb on - strand, within SMc02154at 552.903 kb on - strand, within SMc02154at 552.969 kb on + strand, within SMc02154at 553.001 kb on - strand, within SMc02154at 553.001 kb on - strand, within SMc02154at 553.244 kb on + strand, within SMc02154at 553.244 kb on + strand, within SMc02154at 553.244 kb on + strand, within SMc02154at 553.245 kb on - strand, within SMc02154at 553.245 kb on - strand, within SMc02154at 553.245 kb on - strand, within SMc02154at 553.245 kb on - strand, within SMc02154at 553.246 kb on + strand, within SMc02154at 553.246 kb on + strand, within SMc02154at 553.247 kb on - strand, within SMc02154at 553.278 kb on + strand, within SMc02154at 553.287 kb on - strand, within SMc02154at 553.325 kb on - strand, within SMc02154at 553.373 kb on + strand, within SMc02154at 553.414 kb on + strand, within SMc02154at 553.418 kb on + strand, within SMc02154at 553.471 kb on - strand, within SMc02154at 553.511 kb on + strand, within SMc02154at 553.512 kb on - strand, within SMc02154at 553.512 kb on - strand, within SMc02154at 553.574 kb on + strand, within SMc02154at 553.579 kb on - strand, within SMc02154at 553.579 kb on - strand, within SMc02154at 553.579 kb on - strand, within SMc02154at 553.582 kb on + strand, within SMc02154at 553.583 kb on - strand, within SMc02154at 553.583 kb on - strand, within SMc02154at 553.583 kb on - strand, within SMc02154at 553.659 kb on + strand, within SMc02154at 553.659 kb on + strand, within SMc02154at 553.659 kb on + strand, within SMc02154at 553.660 kb on - strand, within SMc02154at 553.770 kb on + strand, within SMc02154at 553.771 kb on - strand, within SMc02154at 553.771 kb on - strand, within SMc02154at 553.800 kb on + strand, within SMc02154at 553.800 kb on + strand, within SMc02154at 553.801 kb on - strand, within SMc02154at 553.801 kb on - strand, within SMc02154at 553.801 kb on - strand, within SMc02154at 553.886 kb on + strand, within SMc02154at 553.887 kb on - strand, within SMc02154at 553.892 kb on - strand, within SMc02154at 553.892 kb on - strand, within SMc02154at 553.919 kb on - strand, within SMc02154at 553.919 kb on - strand, within SMc02154at 553.942 kb on + strand, within SMc02154at 553.943 kb on - strand, within SMc02154at 554.040 kb on + strand, within SMc02154at 554.041 kb on - strand, within SMc02154at 554.041 kb on - strand, within SMc02154at 554.043 kb on + strand, within SMc02154at 554.044 kb on - strand, within SMc02154at 554.044 kb on - strand, within SMc02154at 554.208 kb on + strand, within SMc02154at 554.209 kb on - strand, within SMc02154at 554.209 kb on - strand, within SMc02154at 554.209 kb on - strand, within SMc02154at 554.425 kb on + strandat 554.696 kb on + strandat 554.697 kb on - strandat 554.697 kb on - strandat 554.697 kb on - strandat 554.697 kb on - strandat 554.768 kb on + strandat 554.768 kb on + strandat 554.769 kb on - strandat 555.028 kb on + strand, within SMc04429at 555.029 kb on - strand, within SMc04429at 555.029 kb on - strand, within SMc04429at 555.084 kb on + strand, within SMc04429at 555.084 kb on + strand, within SMc04429at 555.085 kb on - strand, within SMc04429at 555.085 kb on - strand, within SMc04429at 555.131 kb on - strand, within SMc04429at 555.156 kb on + strand, within SMc04429at 555.172 kb on + strand, within SMc04429at 555.172 kb on + strand, within SMc04429at 555.172 kb on + strand, within SMc04429at 555.172 kb on + strand, within SMc04429at 555.172 kb on + strand, within SMc04429at 555.172 kb on + strand, within SMc04429at 555.173 kb on - strand, within SMc04429at 555.210 kb on - strand, within SMc04429

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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550,819 + SMc02155 0.65 -0.3
550,819 + SMc02155 0.65 -0.2
550,820 - SMc02155 0.65 -0.7
550,822 + SMc02155 0.65 -1.3
550,823 - SMc02155 0.66 -2.0
550,838 + SMc02155 0.66 -2.3
550,870 + SMc02155 0.67 -0.6
550,871 - SMc02155 0.67 -1.0
550,948 - SMc02155 0.70 -1.4
551,277 - SMc02155 0.82 -1.3
551,350 - SMc02155 0.84 -1.0
551,518 + -1.0
551,519 - +0.5
551,531 + -0.8
551,531 + -1.5
551,531 + -2.2
551,532 - -2.4
551,532 - -1.4
551,773 - -0.4
551,885 + -0.2
551,886 - -0.4
551,898 + -1.2
551,941 + -0.2
551,942 - -0.6
551,942 - +0.3
551,942 - -0.8
552,053 + -0.3
552,053 + +0.1
552,053 + +0.1
552,054 - -0.1
552,054 - -0.1
552,054 - +0.3
552,054 - +0.4
552,150 + SMc02154 0.12 +0.1
552,151 - SMc02154 0.12 +0.6
552,151 - SMc02154 0.12 -1.1
552,151 - SMc02154 0.12 +1.4
552,244 - SMc02154 0.15 +0.5
552,313 + SMc02154 0.17 -0.3
552,313 + SMc02154 0.17 +0.2
552,313 + SMc02154 0.17 -0.4
552,372 + SMc02154 0.19 -0.6
552,372 + SMc02154 0.19 +0.8
552,373 - SMc02154 0.19 +0.8
552,406 + SMc02154 0.20 -0.4
552,564 - SMc02154 0.26 +0.1
552,564 - SMc02154 0.26 +0.0
552,615 - SMc02154 0.28 +0.7
552,643 + SMc02154 0.29 -0.2
552,697 + SMc02154 0.30 -0.4
552,697 + SMc02154 0.30 +0.4
552,698 - SMc02154 0.31 -0.2
552,742 - SMc02154 0.32 -0.3
552,744 + SMc02154 0.32 +0.0
552,744 + SMc02154 0.32 -0.5
552,744 + SMc02154 0.32 +0.3
552,744 + +1.5
552,744 + SMc02154 0.32 -0.7
552,744 + SMc02154 0.32 -0.3
552,745 - SMc02154 0.32 -0.3
552,745 - SMc02154 0.32 -0.4
552,745 - SMc02154 0.32 -0.0
552,745 - SMc02154 0.32 -1.1
552,748 + SMc02154 0.32 -0.3
552,748 + SMc02154 0.32 -1.2
552,749 - SMc02154 0.32 +0.1
552,806 - SMc02154 0.34 +0.1
552,806 - SMc02154 0.34 -0.3
552,822 - SMc02154 0.35 -0.1
552,903 - SMc02154 0.38 -0.5
552,969 + SMc02154 0.40 +0.3
553,001 - SMc02154 0.41 +0.3
553,001 - SMc02154 0.41 -0.4
553,244 + SMc02154 0.49 -0.5
553,244 + SMc02154 0.49 +0.4
553,244 + SMc02154 0.49 +2.1
553,245 - SMc02154 0.49 +0.9
553,245 - SMc02154 0.49 -0.5
553,245 - SMc02154 0.49 +0.4
553,245 - SMc02154 0.49 +0.2
553,246 + SMc02154 0.49 -0.1
553,246 + SMc02154 0.49 +1.5
553,247 - SMc02154 0.49 +0.1
553,278 + SMc02154 0.50 -1.6
553,287 - SMc02154 0.51 -0.7
553,325 - SMc02154 0.52 -0.5
553,373 + SMc02154 0.54 -0.7
553,414 + SMc02154 0.55 -0.0
553,418 + SMc02154 0.55 -0.6
553,471 - SMc02154 0.57 -0.5
553,511 + SMc02154 0.59 +0.2
553,512 - SMc02154 0.59 -0.2
553,512 - SMc02154 0.59 -0.3
553,574 + SMc02154 0.61 +0.3
553,579 - SMc02154 0.61 +1.1
553,579 - SMc02154 0.61 +0.4
553,579 - SMc02154 0.61 +0.1
553,582 + SMc02154 0.61 +2.2
553,583 - SMc02154 0.61 +0.2
553,583 - SMc02154 0.61 -0.4
553,583 - SMc02154 0.61 -0.1
553,659 + SMc02154 0.64 -0.2
553,659 + SMc02154 0.64 -0.1
553,659 + SMc02154 0.64 -0.7
553,660 - SMc02154 0.64 +0.7
553,770 + SMc02154 0.67 +0.4
553,771 - SMc02154 0.67 +0.1
553,771 - SMc02154 0.67 +0.4
553,800 + SMc02154 0.68 +0.3
553,800 + SMc02154 0.68 +2.5
553,801 - SMc02154 0.69 +0.3
553,801 - SMc02154 0.69 +0.4
553,801 - SMc02154 0.69 -0.1
553,886 + SMc02154 0.71 +0.5
553,887 - SMc02154 0.71 -0.1
553,892 - SMc02154 0.72 -0.3
553,892 - SMc02154 0.72 -0.1
553,919 - SMc02154 0.73 -0.1
553,919 - SMc02154 0.73 +0.6
553,942 + SMc02154 0.73 -1.5
553,943 - SMc02154 0.73 -0.0
554,040 + SMc02154 0.77 +0.3
554,041 - SMc02154 0.77 +1.3
554,041 - SMc02154 0.77 +0.3
554,043 + SMc02154 0.77 -0.5
554,044 - SMc02154 0.77 -0.6
554,044 - SMc02154 0.77 -0.2
554,208 + SMc02154 0.83 -0.5
554,209 - SMc02154 0.83 +1.2
554,209 - SMc02154 0.83 -0.3
554,209 - SMc02154 0.83 +0.1
554,425 + -0.1
554,696 + -1.1
554,697 - -0.6
554,697 - -0.1
554,697 - -0.2
554,697 - -0.4
554,768 + -0.2
554,768 + +0.2
554,769 - -2.2
555,028 + SMc04429 0.49 -1.1
555,029 - SMc04429 0.49 +1.3
555,029 - SMc04429 0.49 +0.1
555,084 + SMc04429 0.58 -0.2
555,084 + SMc04429 0.58 +0.2
555,085 - SMc04429 0.58 +0.2
555,085 - SMc04429 0.58 -0.6
555,131 - SMc04429 0.65 -1.5
555,156 + SMc04429 0.69 -0.1
555,172 + SMc04429 0.71 -0.3
555,172 + SMc04429 0.71 +1.1
555,172 + SMc04429 0.71 +0.4
555,172 + SMc04429 0.71 -0.5
555,172 + SMc04429 0.71 -0.2
555,172 + SMc04429 0.71 +0.4
555,173 - SMc04429 0.71 -0.0
555,210 - SMc04429 0.77 -0.3

Or see this region's nucleotide sequence