Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01968 and SMc01969 are separated by 45 nucleotides SMc01969 and SMc01970 are separated by 5 nucleotides
SMc01968: SMc01968 - transcriptional regulator, at 2,690,563 to 2,691,606
SMc01968
SMc01969: SMc01969 - hypothetical protein, at 2,691,652 to 2,692,830
SMc01969
SMc01970: SMc01970 - hypothetical protein, at 2,692,836 to 2,693,681
SMc01970
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2690.672 kb on + strand, within SMc01968 at 2690.673 kb on - strand, within SMc01968 at 2690.673 kb on - strand, within SMc01968 at 2690.910 kb on + strand, within SMc01968 at 2690.910 kb on + strand, within SMc01968 at 2690.911 kb on - strand, within SMc01968 at 2691.001 kb on + strand, within SMc01968 at 2691.002 kb on - strand, within SMc01968 at 2691.002 kb on - strand, within SMc01968 at 2691.605 kb on - strand at 2691.605 kb on - strand at 2691.698 kb on + strand at 2691.727 kb on + strand at 2691.728 kb on - strand at 2691.728 kb on - strand at 2691.728 kb on - strand at 2691.836 kb on - strand, within SMc01969 at 2691.836 kb on - strand, within SMc01969 at 2691.836 kb on - strand, within SMc01969 at 2691.884 kb on - strand, within SMc01969 at 2691.908 kb on - strand, within SMc01969 at 2691.908 kb on - strand, within SMc01969 at 2692.024 kb on + strand, within SMc01969 at 2692.025 kb on - strand, within SMc01969 at 2692.196 kb on - strand, within SMc01969 at 2692.222 kb on + strand, within SMc01969 at 2692.270 kb on + strand, within SMc01969 at 2692.354 kb on + strand, within SMc01969 at 2692.627 kb on + strand, within SMc01969 at 2693.006 kb on + strand, within SMc01970 at 2693.006 kb on + strand, within SMc01970 at 2693.007 kb on - strand, within SMc01970 at 2693.203 kb on + strand, within SMc01970 at 2693.204 kb on - strand, within SMc01970 at 2693.213 kb on - strand, within SMc01970 at 2693.486 kb on + strand, within SMc01970 at 2693.487 kb on - strand, within SMc01970 at 2693.782 kb on + strand at 2693.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,690,672 + SMc01968 0.10 -1.0 2,690,673 - SMc01968 0.11 -1.0 2,690,673 - SMc01968 0.11 -1.7 2,690,910 + SMc01968 0.33 -0.3 2,690,910 + SMc01968 0.33 +0.1 2,690,911 - SMc01968 0.33 -1.3 2,691,001 + SMc01968 0.42 +0.2 2,691,002 - SMc01968 0.42 -2.1 2,691,002 - SMc01968 0.42 -1.9 2,691,605 - -1.2 2,691,605 - -0.9 2,691,698 + -1.0 2,691,727 + -2.1 2,691,728 - -0.2 2,691,728 - -0.9 2,691,728 - -0.2 2,691,836 - SMc01969 0.16 -1.9 2,691,836 - SMc01969 0.16 -3.5 2,691,836 - SMc01969 0.16 -2.1 2,691,884 - SMc01969 0.20 -2.5 2,691,908 - SMc01969 0.22 +0.1 2,691,908 - SMc01969 0.22 -1.1 2,692,024 + SMc01969 0.32 -1.2 2,692,025 - SMc01969 0.32 -1.9 2,692,196 - SMc01969 0.46 -1.4 2,692,222 + SMc01969 0.48 -1.7 2,692,270 + SMc01969 0.52 -0.6 2,692,354 + SMc01969 0.60 -1.4 2,692,627 + SMc01969 0.83 -1.4 2,693,006 + SMc01970 0.20 +0.5 2,693,006 + SMc01970 0.20 -0.1 2,693,007 - SMc01970 0.20 -0.4 2,693,203 + SMc01970 0.43 +0.1 2,693,204 - SMc01970 0.43 -0.3 2,693,213 - SMc01970 0.45 +0.2 2,693,486 + SMc01970 0.77 +0.9 2,693,487 - SMc01970 0.77 +0.4 2,693,782 + +0.2 2,693,783 - +0.2
Or see this region's nucleotide sequence