Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01613 and SMc01614 are separated by 37 nucleotides SMc01614 and SMc01615 overlap by 4 nucleotides SMc01615 and SMc01616 are separated by 93 nucleotides
SMc01613: SMc01613 - ribose-5-phosphate isomerase B, at 2,404,360 to 2,404,797
SMc01613
SMc01614: SMc01614 - triosephosphate isomerase, at 2,404,835 to 2,405,602
SMc01614
SMc01615: SMc01615 - transcriptional regulator, at 2,405,599 to 2,406,384
SMc01615
SMc01616: SMc01616 - D-erythrulose-1-phosphate dehydrogenase, at 2,406,478 to 2,407,416
SMc01616
Position (kb)
2404
2405
2406 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2404.172 kb on + strand at 2404.172 kb on + strand at 2404.194 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.225 kb on - strand at 2404.225 kb on - strand at 2404.225 kb on - strand at 2404.225 kb on - strand at 2404.225 kb on - strand at 2404.362 kb on - strand at 2404.362 kb on - strand at 2404.443 kb on + strand, within SMc01613 at 2404.444 kb on - strand, within SMc01613 at 2404.538 kb on + strand, within SMc01613 at 2404.539 kb on - strand, within SMc01613 at 2404.623 kb on + strand, within SMc01613 at 2404.682 kb on + strand, within SMc01613 at 2404.682 kb on + strand, within SMc01613 at 2404.683 kb on - strand, within SMc01613 at 2404.813 kb on + strand at 2404.971 kb on + strand, within SMc01614 at 2405.044 kb on - strand, within SMc01614 at 2405.044 kb on - strand, within SMc01614 at 2405.060 kb on + strand, within SMc01614 at 2405.094 kb on + strand, within SMc01614 at 2405.174 kb on - strand, within SMc01614 at 2405.615 kb on - strand at 2405.778 kb on - strand, within SMc01615 at 2405.778 kb on - strand, within SMc01615 at 2405.952 kb on - strand, within SMc01615 at 2406.046 kb on - strand, within SMc01615 at 2406.439 kb on + strand at 2406.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,404,172 + -0.1 2,404,172 + +0.3 2,404,194 + +0.2 2,404,224 + +0.3 2,404,224 + +0.3 2,404,224 + -0.2 2,404,224 + -1.5 2,404,224 + -0.3 2,404,224 + +0.2 2,404,224 + +0.3 2,404,225 - -0.5 2,404,225 - -0.5 2,404,225 - -0.5 2,404,225 - -0.8 2,404,225 - -0.1 2,404,362 - +0.6 2,404,362 - -0.1 2,404,443 + SMc01613 0.19 -1.2 2,404,444 - SMc01613 0.19 -0.5 2,404,538 + SMc01613 0.41 -0.1 2,404,539 - SMc01613 0.41 -3.7 2,404,623 + SMc01613 0.60 -0.6 2,404,682 + SMc01613 0.74 -1.9 2,404,682 + SMc01613 0.74 -0.3 2,404,683 - SMc01613 0.74 -0.6 2,404,813 + -0.0 2,404,971 + SMc01614 0.18 +0.5 2,405,044 - SMc01614 0.27 -0.7 2,405,044 - SMc01614 0.27 +0.3 2,405,060 + SMc01614 0.29 +0.5 2,405,094 + SMc01614 0.34 -0.5 2,405,174 - SMc01614 0.44 -0.0 2,405,615 - +0.1 2,405,778 - SMc01615 0.23 -0.6 2,405,778 - SMc01615 0.23 +0.0 2,405,952 - SMc01615 0.45 +0.2 2,406,046 - SMc01615 0.57 -1.0 2,406,439 + -1.3 2,406,440 - +0.3
Or see this region's nucleotide sequence