Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01127 and SMc01126 are separated by 278 nucleotides SMc01126 and SMc01125 are separated by 102 nucleotides
SMc01127: SMc01127 - hypothetical protein, at 423,198 to 424,088
SMc01127
SMc01126: SMc01126 - malic enzyme, at 424,367 to 426,652
SMc01126
SMc01125: SMc01125 - DNA mismatch repair protein MutS, at 426,755 to 429,505
SMc01125
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -2
-1
0
1 at 423.473 kb on + strand, within SMc01127 at 423.473 kb on + strand, within SMc01127 at 423.473 kb on + strand, within SMc01127 at 423.584 kb on - strand at 423.702 kb on + strand, within SMc01127 at 423.800 kb on + strand, within SMc01127 at 423.930 kb on + strand, within SMc01127 at 423.931 kb on - strand, within SMc01127 at 423.931 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127 at 424.129 kb on - strand at 424.138 kb on + strand at 424.139 kb on - strand at 424.229 kb on - strand at 424.229 kb on - strand at 424.229 kb on - strand at 424.642 kb on - strand, within SMc01126 at 424.859 kb on - strand, within SMc01126 at 424.950 kb on + strand, within SMc01126 at 424.970 kb on - strand, within SMc01126 at 425.061 kb on + strand at 425.061 kb on + strand, within SMc01126 at 425.061 kb on + strand, within SMc01126 at 425.062 kb on - strand, within SMc01126 at 425.062 kb on - strand, within SMc01126 at 425.099 kb on - strand, within SMc01126 at 425.099 kb on - strand, within SMc01126 at 425.101 kb on - strand, within SMc01126 at 425.241 kb on + strand, within SMc01126 at 425.379 kb on + strand, within SMc01126 at 425.380 kb on - strand, within SMc01126 at 425.380 kb on - strand, within SMc01126 at 425.425 kb on + strand, within SMc01126 at 425.426 kb on - strand, within SMc01126 at 425.426 kb on - strand, within SMc01126 at 425.426 kb on - strand, within SMc01126 at 425.491 kb on + strand, within SMc01126 at 425.491 kb on + strand, within SMc01126 at 425.492 kb on - strand, within SMc01126 at 425.492 kb on - strand, within SMc01126 at 425.492 kb on - strand, within SMc01126 at 425.493 kb on + strand, within SMc01126 at 425.494 kb on - strand, within SMc01126 at 425.527 kb on - strand, within SMc01126 at 425.648 kb on - strand, within SMc01126 at 425.650 kb on - strand, within SMc01126 at 425.686 kb on - strand, within SMc01126 at 425.946 kb on + strand, within SMc01126 at 425.946 kb on + strand, within SMc01126 at 425.946 kb on + strand, within SMc01126 at 425.946 kb on + strand, within SMc01126 at 425.947 kb on - strand, within SMc01126 at 425.947 kb on - strand, within SMc01126 at 425.947 kb on - strand, within SMc01126 at 425.947 kb on - strand, within SMc01126 at 426.445 kb on - strand at 426.445 kb on - strand at 426.450 kb on + strand at 426.450 kb on + strand at 426.711 kb on + strand at 426.726 kb on - strand at 426.902 kb on + strand at 426.967 kb on + strand at 426.967 kb on + strand at 426.967 kb on + strand at 427.047 kb on - strand, within SMc01125 at 427.220 kb on + strand, within SMc01125 at 427.221 kb on - strand, within SMc01125 at 427.265 kb on + strand, within SMc01125 at 427.266 kb on - strand, within SMc01125 at 427.266 kb on - strand, within SMc01125 at 427.266 kb on - strand, within SMc01125 at 427.266 kb on - strand, within SMc01125 at 427.344 kb on + strand, within SMc01125 at 427.345 kb on - strand, within SMc01125 at 427.496 kb on + strand, within SMc01125 at 427.499 kb on + strand, within SMc01125 at 427.499 kb on + strand, within SMc01125 at 427.574 kb on + strand, within SMc01125 at 427.574 kb on + strand, within SMc01125 at 427.574 kb on + strand, within SMc01125 at 427.575 kb on - strand, within SMc01125 at 427.575 kb on - strand, within SMc01125
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 423,473 + SMc01127 0.31 -2.1 423,473 + SMc01127 0.31 +0.1 423,473 + SMc01127 0.31 -0.5 423,584 - +0.4 423,702 + SMc01127 0.57 -0.2 423,800 + SMc01127 0.68 +0.8 423,930 + SMc01127 0.82 +0.6 423,931 - SMc01127 0.82 -0.5 423,931 - SMc01127 0.82 -0.3 423,933 - SMc01127 0.82 -0.1 423,933 - SMc01127 0.82 -0.1 423,933 - SMc01127 0.82 -0.7 424,129 - +0.6 424,138 + -0.2 424,139 - +0.1 424,229 - -0.3 424,229 - +0.2 424,229 - +1.5 424,642 - SMc01126 0.12 +0.1 424,859 - SMc01126 0.22 +0.2 424,950 + SMc01126 0.26 -0.1 424,970 - SMc01126 0.26 -0.2 425,061 + -0.0 425,061 + SMc01126 0.30 -0.6 425,061 + SMc01126 0.30 +0.2 425,062 - SMc01126 0.30 +0.6 425,062 - SMc01126 0.30 +1.0 425,099 - SMc01126 0.32 -0.2 425,099 - SMc01126 0.32 +0.2 425,101 - SMc01126 0.32 +0.3 425,241 + SMc01126 0.38 -0.6 425,379 + SMc01126 0.44 -1.2 425,380 - SMc01126 0.44 +1.6 425,380 - SMc01126 0.44 +0.2 425,425 + SMc01126 0.46 -0.2 425,426 - SMc01126 0.46 +0.3 425,426 - SMc01126 0.46 +0.0 425,426 - SMc01126 0.46 +0.0 425,491 + SMc01126 0.49 -0.7 425,491 + SMc01126 0.49 -0.2 425,492 - SMc01126 0.49 -0.3 425,492 - SMc01126 0.49 -0.4 425,492 - SMc01126 0.49 +0.8 425,493 + SMc01126 0.49 -0.1 425,494 - SMc01126 0.49 +0.2 425,527 - SMc01126 0.51 -0.8 425,648 - SMc01126 0.56 +0.2 425,650 - SMc01126 0.56 +0.6 425,686 - SMc01126 0.58 -1.4 425,946 + SMc01126 0.69 -0.3 425,946 + SMc01126 0.69 -0.6 425,946 + SMc01126 0.69 +0.4 425,946 + SMc01126 0.69 -0.4 425,947 - SMc01126 0.69 +0.2 425,947 - SMc01126 0.69 +0.4 425,947 - SMc01126 0.69 +0.3 425,947 - SMc01126 0.69 -1.4 426,445 - -0.7 426,445 - +0.1 426,450 + +0.4 426,450 + +0.3 426,711 + -0.5 426,726 - +0.2 426,902 + -0.4 426,967 + -0.1 426,967 + +0.1 426,967 + +0.6 427,047 - SMc01125 0.11 +0.0 427,220 + SMc01125 0.17 -0.2 427,221 - SMc01125 0.17 -0.4 427,265 + SMc01125 0.19 -0.0 427,266 - SMc01125 0.19 -0.4 427,266 - SMc01125 0.19 -1.2 427,266 - SMc01125 0.19 -0.2 427,266 - SMc01125 0.19 -0.2 427,344 + SMc01125 0.21 -0.5 427,345 - SMc01125 0.21 -0.8 427,496 + SMc01125 0.27 +0.3 427,499 + SMc01125 0.27 -1.6 427,499 + SMc01125 0.27 -0.6 427,574 + SMc01125 0.30 -1.1 427,574 + SMc01125 0.30 -0.3 427,574 + SMc01125 0.30 +0.1 427,575 - SMc01125 0.30 +1.2 427,575 - SMc01125 0.30 -1.2
Or see this region's nucleotide sequence