Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01126 and SMc01125 are separated by 102 nucleotides SMc01125 and SMc01124 are separated by 101 nucleotides
SMc01126: SMc01126 - malic enzyme, at 424,367 to 426,652
SMc01126
SMc01125: SMc01125 - DNA mismatch repair protein MutS, at 426,755 to 429,505
SMc01125
SMc01124: SMc01124 - PII uridylyl-transferase, at 429,607 to 432,456
SMc01124
Position (kb) 426
427
428
429
430 Strain fitness (log2 ratio) -1
0
1
2 at 425.946 kb on + strand, within SMc01126 at 425.946 kb on + strand, within SMc01126 at 425.946 kb on + strand, within SMc01126 at 425.946 kb on + strand, within SMc01126 at 425.947 kb on - strand, within SMc01126 at 425.947 kb on - strand, within SMc01126 at 425.947 kb on - strand, within SMc01126 at 425.947 kb on - strand, within SMc01126 at 426.445 kb on - strand at 426.445 kb on - strand at 426.450 kb on + strand at 426.450 kb on + strand at 426.711 kb on + strand at 426.726 kb on - strand at 426.902 kb on + strand at 426.967 kb on + strand at 426.967 kb on + strand at 426.967 kb on + strand at 427.047 kb on - strand, within SMc01125 at 427.220 kb on + strand, within SMc01125 at 427.221 kb on - strand, within SMc01125 at 427.265 kb on + strand, within SMc01125 at 427.266 kb on - strand, within SMc01125 at 427.266 kb on - strand, within SMc01125 at 427.266 kb on - strand, within SMc01125 at 427.266 kb on - strand, within SMc01125 at 427.344 kb on + strand, within SMc01125 at 427.345 kb on - strand, within SMc01125 at 427.496 kb on + strand, within SMc01125 at 427.499 kb on + strand, within SMc01125 at 427.499 kb on + strand, within SMc01125 at 427.574 kb on + strand, within SMc01125 at 427.574 kb on + strand, within SMc01125 at 427.574 kb on + strand, within SMc01125 at 427.575 kb on - strand, within SMc01125 at 427.575 kb on - strand, within SMc01125 at 428.222 kb on + strand, within SMc01125 at 428.222 kb on + strand, within SMc01125 at 428.223 kb on - strand, within SMc01125 at 428.280 kb on - strand, within SMc01125 at 428.579 kb on + strand, within SMc01125 at 428.580 kb on - strand, within SMc01125 at 428.580 kb on - strand, within SMc01125 at 428.580 kb on - strand, within SMc01125 at 428.846 kb on - strand, within SMc01125 at 429.193 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.474 kb on - strand at 429.518 kb on - strand at 429.549 kb on + strand at 429.577 kb on + strand at 429.577 kb on + strand at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.150 kb on + strand, within SMc01124 at 430.150 kb on + strand, within SMc01124
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 425,946 + SMc01126 0.69 -0.3 425,946 + SMc01126 0.69 -0.6 425,946 + SMc01126 0.69 +0.4 425,946 + SMc01126 0.69 -0.4 425,947 - SMc01126 0.69 +0.2 425,947 - SMc01126 0.69 +0.4 425,947 - SMc01126 0.69 +0.3 425,947 - SMc01126 0.69 -1.4 426,445 - -0.7 426,445 - +0.1 426,450 + +0.4 426,450 + +0.3 426,711 + -0.5 426,726 - +0.2 426,902 + -0.4 426,967 + -0.1 426,967 + +0.1 426,967 + +0.6 427,047 - SMc01125 0.11 +0.0 427,220 + SMc01125 0.17 -0.2 427,221 - SMc01125 0.17 -0.4 427,265 + SMc01125 0.19 -0.0 427,266 - SMc01125 0.19 -0.4 427,266 - SMc01125 0.19 -1.2 427,266 - SMc01125 0.19 -0.2 427,266 - SMc01125 0.19 -0.2 427,344 + SMc01125 0.21 -0.5 427,345 - SMc01125 0.21 -0.8 427,496 + SMc01125 0.27 +0.3 427,499 + SMc01125 0.27 -1.6 427,499 + SMc01125 0.27 -0.6 427,574 + SMc01125 0.30 -1.1 427,574 + SMc01125 0.30 -0.3 427,574 + SMc01125 0.30 +0.1 427,575 - SMc01125 0.30 +1.2 427,575 - SMc01125 0.30 -1.2 428,222 + SMc01125 0.53 +0.6 428,222 + SMc01125 0.53 +0.1 428,223 - SMc01125 0.53 -0.4 428,280 - SMc01125 0.55 +0.5 428,579 + SMc01125 0.66 -0.5 428,580 - SMc01125 0.66 -0.1 428,580 - SMc01125 0.66 -0.1 428,580 - SMc01125 0.66 -1.7 428,846 - SMc01125 0.76 +0.2 429,193 - SMc01125 0.89 +0.2 429,219 - SMc01125 0.90 -1.1 429,219 - SMc01125 0.90 -0.5 429,219 - SMc01125 0.90 +0.3 429,474 - +0.4 429,518 - +0.5 429,549 + +0.2 429,577 + -1.6 429,577 + +0.3 430,036 + SMc01124 0.15 +0.4 430,036 + SMc01124 0.15 +0.1 430,036 + SMc01124 0.15 +0.6 430,036 + SMc01124 0.15 +0.9 430,036 + SMc01124 0.15 +1.0 430,036 + SMc01124 0.15 +2.7 430,036 + SMc01124 0.15 +0.3 430,150 + SMc01124 0.19 -0.2 430,150 + SMc01124 0.19 +0.6
Or see this region's nucleotide sequence