Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00968 and SMc00967 are separated by 13 nucleotides SMc00967 and SMc00966 overlap by 13 nucleotides SMc00966 and SMc00965 overlap by 17 nucleotides
SMc00968: SMc00968 - oxidoreductase, at 972,371 to 973,339
SMc00968
SMc00967: SMc00967 - hypothetical protein, at 973,353 to 973,754
SMc00967
SMc00966: SMc00966 - acetyl-COA acyltransferase, at 973,742 to 974,935
SMc00966
SMc00965: SMc00965 - hypothetical protein, at 974,919 to 976,415
SMc00965
Position (kb) 973
974
975 Strain fitness (log2 ratio) -2
-1
0
1 at 972.975 kb on + strand, within SMc00968 at 972.975 kb on + strand, within SMc00968 at 972.975 kb on + strand, within SMc00968 at 972.976 kb on - strand, within SMc00968 at 972.976 kb on - strand, within SMc00968 at 973.183 kb on + strand, within SMc00968 at 973.184 kb on - strand, within SMc00968 at 973.185 kb on + strand, within SMc00968 at 973.186 kb on - strand, within SMc00968 at 973.236 kb on - strand, within SMc00968 at 973.406 kb on + strand, within SMc00967 at 973.408 kb on + strand, within SMc00967 at 973.408 kb on + strand, within SMc00967 at 973.408 kb on + strand, within SMc00967 at 973.409 kb on - strand, within SMc00967 at 973.409 kb on - strand, within SMc00967 at 973.409 kb on - strand, within SMc00967 at 973.409 kb on - strand, within SMc00967 at 973.409 kb on - strand, within SMc00967 at 973.425 kb on - strand, within SMc00967 at 973.440 kb on + strand, within SMc00967 at 973.440 kb on + strand, within SMc00967 at 973.441 kb on - strand, within SMc00967 at 973.443 kb on + strand, within SMc00967 at 973.443 kb on + strand, within SMc00967 at 973.444 kb on - strand, within SMc00967 at 973.578 kb on - strand, within SMc00967 at 973.705 kb on + strand, within SMc00967 at 973.893 kb on + strand, within SMc00966 at 973.894 kb on - strand, within SMc00966 at 974.592 kb on + strand, within SMc00966 at 974.592 kb on + strand, within SMc00966 at 974.593 kb on - strand, within SMc00966 at 974.593 kb on - strand, within SMc00966 at 974.593 kb on - strand, within SMc00966 at 974.753 kb on - strand, within SMc00966 at 975.025 kb on - strand at 975.043 kb on + strand at 975.214 kb on + strand, within SMc00965 at 975.272 kb on + strand, within SMc00965 at 975.272 kb on + strand, within SMc00965 at 975.538 kb on + strand, within SMc00965 at 975.620 kb on + strand, within SMc00965 at 975.621 kb on - strand, within SMc00965 at 975.621 kb on - strand, within SMc00965 at 975.802 kb on + strand, within SMc00965 at 975.803 kb on - strand, within SMc00965
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 972,975 + SMc00968 0.62 +0.4 972,975 + SMc00968 0.62 +0.4 972,975 + SMc00968 0.62 -0.8 972,976 - SMc00968 0.62 -0.4 972,976 - SMc00968 0.62 -0.2 973,183 + SMc00968 0.84 +0.0 973,184 - SMc00968 0.84 +0.4 973,185 + SMc00968 0.84 +0.3 973,186 - SMc00968 0.84 -0.8 973,236 - SMc00968 0.89 -0.4 973,406 + SMc00967 0.13 +0.4 973,408 + SMc00967 0.14 -2.5 973,408 + SMc00967 0.14 -0.3 973,408 + SMc00967 0.14 +0.3 973,409 - SMc00967 0.14 -0.2 973,409 - SMc00967 0.14 -0.1 973,409 - SMc00967 0.14 +0.6 973,409 - SMc00967 0.14 -0.7 973,409 - SMc00967 0.14 +0.1 973,425 - SMc00967 0.18 -0.3 973,440 + SMc00967 0.22 -0.3 973,440 + SMc00967 0.22 -0.9 973,441 - SMc00967 0.22 -0.2 973,443 + SMc00967 0.22 -1.1 973,443 + SMc00967 0.22 -0.2 973,444 - SMc00967 0.23 -2.1 973,578 - SMc00967 0.56 -2.3 973,705 + SMc00967 0.88 +0.1 973,893 + SMc00966 0.13 +0.1 973,894 - SMc00966 0.13 +0.2 974,592 + SMc00966 0.71 -0.1 974,592 + SMc00966 0.71 -0.9 974,593 - SMc00966 0.71 -0.8 974,593 - SMc00966 0.71 -0.5 974,593 - SMc00966 0.71 +0.1 974,753 - SMc00966 0.85 +0.3 975,025 - +0.5 975,043 + -1.0 975,214 + SMc00965 0.20 +0.1 975,272 + SMc00965 0.24 +0.3 975,272 + SMc00965 0.24 +0.5 975,538 + SMc00965 0.41 -0.4 975,620 + SMc00965 0.47 +0.3 975,621 - SMc00965 0.47 +0.0 975,621 - SMc00965 0.47 +0.5 975,802 + SMc00965 0.59 +0.5 975,803 - SMc00965 0.59 -0.1
Or see this region's nucleotide sequence