Strain Fitness in Sinorhizobium meliloti 1021 around SMc00860

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00861 and SMc00860 are separated by 262 nucleotidesSMc00860 and SMc00859 are separated by 107 nucleotidesSMc00859 and SMc00858 overlap by 32 nucleotides SMc00861: SMc00861 - signal peptide protein, at 925,413 to 927,242 SMc00861 SMc00860: SMc00860 - octaprenyl-diphosphate synthase, at 927,505 to 928,521 SMc00860 SMc00859: SMc00859 - hypothetical protein, at 928,629 to 928,850 SMc00859 SMc00858: SMc00858 - hypothetical protein, at 928,819 to 929,655 SMc00858 Position (kb) 927 928 929Strain fitness (log2 ratio) -2 -1 0 1at 927.267 kb on - strandat 928.607 kb on + strandat 928.608 kb on - strandat 928.608 kb on - strandat 928.621 kb on - strandat 928.735 kb on + strand, within SMc00859at 928.736 kb on - strand, within SMc00859at 928.736 kb on - strand, within SMc00859at 929.471 kb on + strand, within SMc00858

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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927,267 - -0.2
928,607 + -1.1
928,608 - -1.2
928,608 - -0.9
928,621 - -0.7
928,735 + SMc00859 0.48 +0.2
928,736 - SMc00859 0.48 -1.5
928,736 - SMc00859 0.48 -2.2
929,471 + SMc00858 0.78 -2.6

Or see this region's nucleotide sequence