Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00735 and SMc00734 are separated by 18 nucleotides SMc00734 and SMc00733 are separated by 170 nucleotides
SMc00735: SMc00735 - glutamyl-Q tRNA(Asp) synthetase, at 2,845,948 to 2,846,844
SMc00735
SMc00734: SMc00734 - ribonuclease RNase BN (RBN) transmembrane protein, at 2,846,863 to 2,847,738
SMc00734
SMc00733: SMc00733 - short chain dehydrogenase, at 2,847,909 to 2,848,742
SMc00733
Position (kb)
2846
2847
2848 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2846.209 kb on + strand at 2846.210 kb on - strand, within SMc00735 at 2846.210 kb on - strand, within SMc00735 at 2846.416 kb on + strand, within SMc00735 at 2846.416 kb on + strand, within SMc00735 at 2846.416 kb on + strand, within SMc00735 at 2846.579 kb on - strand, within SMc00735 at 2846.579 kb on - strand, within SMc00735 at 2846.579 kb on - strand, within SMc00735 at 2846.579 kb on - strand, within SMc00735 at 2846.648 kb on - strand, within SMc00735 at 2846.707 kb on + strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.708 kb on - strand, within SMc00735 at 2846.864 kb on + strand at 2846.865 kb on - strand at 2846.865 kb on - strand at 2846.916 kb on - strand at 2846.972 kb on + strand, within SMc00734 at 2846.972 kb on + strand, within SMc00734 at 2846.973 kb on - strand, within SMc00734 at 2846.973 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.015 kb on - strand, within SMc00734 at 2847.026 kb on + strand, within SMc00734 at 2847.027 kb on - strand, within SMc00734 at 2847.045 kb on + strand, within SMc00734 at 2847.047 kb on + strand, within SMc00734 at 2847.047 kb on + strand, within SMc00734 at 2847.048 kb on - strand, within SMc00734 at 2847.048 kb on - strand, within SMc00734 at 2847.048 kb on - strand, within SMc00734 at 2847.048 kb on - strand, within SMc00734 at 2847.115 kb on + strand, within SMc00734 at 2847.115 kb on + strand, within SMc00734 at 2847.353 kb on + strand, within SMc00734 at 2847.354 kb on - strand, within SMc00734 at 2847.354 kb on - strand, within SMc00734 at 2847.354 kb on - strand, within SMc00734 at 2847.354 kb on - strand, within SMc00734 at 2847.380 kb on + strand, within SMc00734 at 2847.431 kb on + strand, within SMc00734 at 2847.432 kb on - strand, within SMc00734 at 2847.456 kb on + strand, within SMc00734 at 2847.456 kb on + strand, within SMc00734 at 2847.456 kb on + strand, within SMc00734 at 2847.457 kb on - strand, within SMc00734 at 2847.457 kb on - strand, within SMc00734 at 2847.457 kb on - strand, within SMc00734 at 2847.457 kb on - strand, within SMc00734 at 2847.854 kb on + strand at 2847.894 kb on - strand at 2847.894 kb on - strand at 2847.963 kb on + strand at 2847.963 kb on + strand at 2847.963 kb on + strand at 2847.964 kb on - strand at 2847.964 kb on - strand at 2848.074 kb on + strand, within SMc00733 at 2848.075 kb on - strand, within SMc00733 at 2848.075 kb on - strand, within SMc00733 at 2848.075 kb on - strand, within SMc00733 at 2848.351 kb on - strand, within SMc00733 at 2848.351 kb on - strand at 2848.482 kb on + strand, within SMc00733 at 2848.482 kb on + strand, within SMc00733 at 2848.482 kb on + strand, within SMc00733 at 2848.530 kb on + strand, within SMc00733 at 2848.530 kb on + strand, within SMc00733 at 2848.531 kb on - strand, within SMc00733 at 2848.602 kb on + strand, within SMc00733 at 2848.650 kb on + strand, within SMc00733 at 2848.650 kb on + strand, within SMc00733 at 2848.650 kb on + strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.652 kb on + strand, within SMc00733 at 2848.652 kb on + strand, within SMc00733 at 2848.652 kb on + strand, within SMc00733 at 2848.653 kb on - strand, within SMc00733 at 2848.653 kb on - strand, within SMc00733 at 2848.653 kb on - strand, within SMc00733 at 2848.654 kb on + strand, within SMc00733 at 2848.655 kb on - strand, within SMc00733 at 2848.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,846,209 + +2.4 2,846,210 - SMc00735 0.29 +0.1 2,846,210 - SMc00735 0.29 -0.8 2,846,416 + SMc00735 0.52 -0.4 2,846,416 + SMc00735 0.52 -0.6 2,846,416 + SMc00735 0.52 +0.5 2,846,579 - SMc00735 0.70 +0.3 2,846,579 - SMc00735 0.70 -0.4 2,846,579 - SMc00735 0.70 +0.0 2,846,579 - SMc00735 0.70 -0.1 2,846,648 - SMc00735 0.78 -0.6 2,846,707 + SMc00735 0.85 -0.1 2,846,708 - SMc00735 0.85 -0.1 2,846,708 - SMc00735 0.85 -0.0 2,846,708 - SMc00735 0.85 -0.3 2,846,708 - SMc00735 0.85 +1.5 2,846,708 - SMc00735 0.85 -0.0 2,846,708 - SMc00735 0.85 -0.6 2,846,864 + +1.5 2,846,865 - +0.4 2,846,865 - -0.1 2,846,916 - -0.5 2,846,972 + SMc00734 0.12 -0.4 2,846,972 + SMc00734 0.12 -0.4 2,846,973 - SMc00734 0.13 -0.0 2,846,973 - SMc00734 0.13 -0.8 2,847,015 - SMc00734 0.17 -0.9 2,847,015 - SMc00734 0.17 -1.6 2,847,015 - SMc00734 0.17 -1.9 2,847,015 - SMc00734 0.17 -1.2 2,847,015 - SMc00734 0.17 -0.8 2,847,026 + SMc00734 0.19 -0.5 2,847,027 - SMc00734 0.19 -0.6 2,847,045 + SMc00734 0.21 -0.5 2,847,047 + SMc00734 0.21 -1.6 2,847,047 + SMc00734 0.21 -1.7 2,847,048 - SMc00734 0.21 -0.9 2,847,048 - SMc00734 0.21 -0.5 2,847,048 - SMc00734 0.21 +0.0 2,847,048 - SMc00734 0.21 -0.3 2,847,115 + SMc00734 0.29 -0.1 2,847,115 + SMc00734 0.29 -0.2 2,847,353 + SMc00734 0.56 -0.3 2,847,354 - SMc00734 0.56 -0.7 2,847,354 - SMc00734 0.56 -0.9 2,847,354 - SMc00734 0.56 -1.4 2,847,354 - SMc00734 0.56 -0.2 2,847,380 + SMc00734 0.59 -0.5 2,847,431 + SMc00734 0.65 -1.1 2,847,432 - SMc00734 0.65 -1.2 2,847,456 + SMc00734 0.68 -0.4 2,847,456 + SMc00734 0.68 -1.1 2,847,456 + SMc00734 0.68 -1.6 2,847,457 - SMc00734 0.68 -0.5 2,847,457 - SMc00734 0.68 -0.6 2,847,457 - SMc00734 0.68 -0.0 2,847,457 - SMc00734 0.68 -0.6 2,847,854 + -0.2 2,847,894 - +0.9 2,847,894 - -0.5 2,847,963 + -0.4 2,847,963 + -2.0 2,847,963 + -0.7 2,847,964 - +1.0 2,847,964 - +1.0 2,848,074 + SMc00733 0.20 -1.1 2,848,075 - SMc00733 0.20 +1.0 2,848,075 - SMc00733 0.20 +0.3 2,848,075 - SMc00733 0.20 -0.3 2,848,351 - SMc00733 0.53 +0.6 2,848,351 - -0.4 2,848,482 + SMc00733 0.69 -0.8 2,848,482 + SMc00733 0.69 +0.0 2,848,482 + SMc00733 0.69 -0.1 2,848,530 + SMc00733 0.74 +0.6 2,848,530 + SMc00733 0.74 -0.0 2,848,531 - SMc00733 0.75 -0.9 2,848,602 + SMc00733 0.83 +0.1 2,848,650 + SMc00733 0.89 +0.5 2,848,650 + SMc00733 0.89 -0.4 2,848,650 + SMc00733 0.89 -0.1 2,848,651 - SMc00733 0.89 -0.2 2,848,651 - SMc00733 0.89 +0.1 2,848,651 - SMc00733 0.89 -0.4 2,848,651 - SMc00733 0.89 +0.0 2,848,651 - SMc00733 0.89 +0.2 2,848,652 + SMc00733 0.89 -0.4 2,848,652 + SMc00733 0.89 -0.3 2,848,652 + SMc00733 0.89 +0.2 2,848,653 - SMc00733 0.89 -0.4 2,848,653 - SMc00733 0.89 +1.0 2,848,653 - SMc00733 0.89 +0.0 2,848,654 + SMc00733 0.89 +0.2 2,848,655 - SMc00733 0.89 +0.8 2,848,717 - -0.2
Or see this region's nucleotide sequence