Strain Fitness in Sinorhizobium meliloti 1021 around SMc00734

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00735 and SMc00734 are separated by 18 nucleotidesSMc00734 and SMc00733 are separated by 170 nucleotides SMc00735: SMc00735 - glutamyl-Q tRNA(Asp) synthetase, at 2,845,948 to 2,846,844 SMc00735 SMc00734: SMc00734 - ribonuclease RNase BN (RBN) transmembrane protein, at 2,846,863 to 2,847,738 SMc00734 SMc00733: SMc00733 - short chain dehydrogenase, at 2,847,909 to 2,848,742 SMc00733 Position (kb) 2846 2847 2848Strain fitness (log2 ratio) -2 -1 0 1 2at 2846.209 kb on + strandat 2846.210 kb on - strand, within SMc00735at 2846.210 kb on - strand, within SMc00735at 2846.416 kb on + strand, within SMc00735at 2846.416 kb on + strand, within SMc00735at 2846.416 kb on + strand, within SMc00735at 2846.579 kb on - strand, within SMc00735at 2846.579 kb on - strand, within SMc00735at 2846.579 kb on - strand, within SMc00735at 2846.579 kb on - strand, within SMc00735at 2846.648 kb on - strand, within SMc00735at 2846.707 kb on + strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.708 kb on - strand, within SMc00735at 2846.864 kb on + strandat 2846.865 kb on - strandat 2846.865 kb on - strandat 2846.916 kb on - strandat 2846.972 kb on + strand, within SMc00734at 2846.972 kb on + strand, within SMc00734at 2846.973 kb on - strand, within SMc00734at 2846.973 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.015 kb on - strand, within SMc00734at 2847.026 kb on + strand, within SMc00734at 2847.027 kb on - strand, within SMc00734at 2847.045 kb on + strand, within SMc00734at 2847.047 kb on + strand, within SMc00734at 2847.047 kb on + strand, within SMc00734at 2847.048 kb on - strand, within SMc00734at 2847.048 kb on - strand, within SMc00734at 2847.048 kb on - strand, within SMc00734at 2847.048 kb on - strand, within SMc00734at 2847.115 kb on + strand, within SMc00734at 2847.115 kb on + strand, within SMc00734at 2847.353 kb on + strand, within SMc00734at 2847.354 kb on - strand, within SMc00734at 2847.354 kb on - strand, within SMc00734at 2847.354 kb on - strand, within SMc00734at 2847.354 kb on - strand, within SMc00734at 2847.380 kb on + strand, within SMc00734at 2847.431 kb on + strand, within SMc00734at 2847.432 kb on - strand, within SMc00734at 2847.456 kb on + strand, within SMc00734at 2847.456 kb on + strand, within SMc00734at 2847.456 kb on + strand, within SMc00734at 2847.457 kb on - strand, within SMc00734at 2847.457 kb on - strand, within SMc00734at 2847.457 kb on - strand, within SMc00734at 2847.457 kb on - strand, within SMc00734at 2847.854 kb on + strandat 2847.894 kb on - strandat 2847.894 kb on - strandat 2847.963 kb on + strandat 2847.963 kb on + strandat 2847.963 kb on + strandat 2847.964 kb on - strandat 2847.964 kb on - strandat 2848.074 kb on + strand, within SMc00733at 2848.075 kb on - strand, within SMc00733at 2848.075 kb on - strand, within SMc00733at 2848.075 kb on - strand, within SMc00733at 2848.351 kb on - strand, within SMc00733at 2848.351 kb on - strandat 2848.482 kb on + strand, within SMc00733at 2848.482 kb on + strand, within SMc00733at 2848.482 kb on + strand, within SMc00733at 2848.530 kb on + strand, within SMc00733at 2848.530 kb on + strand, within SMc00733at 2848.531 kb on - strand, within SMc00733at 2848.602 kb on + strand, within SMc00733at 2848.650 kb on + strand, within SMc00733at 2848.650 kb on + strand, within SMc00733at 2848.650 kb on + strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.652 kb on + strand, within SMc00733at 2848.652 kb on + strand, within SMc00733at 2848.652 kb on + strand, within SMc00733at 2848.653 kb on - strand, within SMc00733at 2848.653 kb on - strand, within SMc00733at 2848.653 kb on - strand, within SMc00733at 2848.654 kb on + strand, within SMc00733at 2848.655 kb on - strand, within SMc00733at 2848.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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2,846,209 + +2.4
2,846,210 - SMc00735 0.29 +0.1
2,846,210 - SMc00735 0.29 -0.8
2,846,416 + SMc00735 0.52 -0.4
2,846,416 + SMc00735 0.52 -0.6
2,846,416 + SMc00735 0.52 +0.5
2,846,579 - SMc00735 0.70 +0.3
2,846,579 - SMc00735 0.70 -0.4
2,846,579 - SMc00735 0.70 +0.0
2,846,579 - SMc00735 0.70 -0.1
2,846,648 - SMc00735 0.78 -0.6
2,846,707 + SMc00735 0.85 -0.1
2,846,708 - SMc00735 0.85 -0.1
2,846,708 - SMc00735 0.85 -0.0
2,846,708 - SMc00735 0.85 -0.3
2,846,708 - SMc00735 0.85 +1.5
2,846,708 - SMc00735 0.85 -0.0
2,846,708 - SMc00735 0.85 -0.6
2,846,864 + +1.5
2,846,865 - +0.4
2,846,865 - -0.1
2,846,916 - -0.5
2,846,972 + SMc00734 0.12 -0.4
2,846,972 + SMc00734 0.12 -0.4
2,846,973 - SMc00734 0.13 -0.0
2,846,973 - SMc00734 0.13 -0.8
2,847,015 - SMc00734 0.17 -0.9
2,847,015 - SMc00734 0.17 -1.6
2,847,015 - SMc00734 0.17 -1.9
2,847,015 - SMc00734 0.17 -1.2
2,847,015 - SMc00734 0.17 -0.8
2,847,026 + SMc00734 0.19 -0.5
2,847,027 - SMc00734 0.19 -0.6
2,847,045 + SMc00734 0.21 -0.5
2,847,047 + SMc00734 0.21 -1.6
2,847,047 + SMc00734 0.21 -1.7
2,847,048 - SMc00734 0.21 -0.9
2,847,048 - SMc00734 0.21 -0.5
2,847,048 - SMc00734 0.21 +0.0
2,847,048 - SMc00734 0.21 -0.3
2,847,115 + SMc00734 0.29 -0.1
2,847,115 + SMc00734 0.29 -0.2
2,847,353 + SMc00734 0.56 -0.3
2,847,354 - SMc00734 0.56 -0.7
2,847,354 - SMc00734 0.56 -0.9
2,847,354 - SMc00734 0.56 -1.4
2,847,354 - SMc00734 0.56 -0.2
2,847,380 + SMc00734 0.59 -0.5
2,847,431 + SMc00734 0.65 -1.1
2,847,432 - SMc00734 0.65 -1.2
2,847,456 + SMc00734 0.68 -0.4
2,847,456 + SMc00734 0.68 -1.1
2,847,456 + SMc00734 0.68 -1.6
2,847,457 - SMc00734 0.68 -0.5
2,847,457 - SMc00734 0.68 -0.6
2,847,457 - SMc00734 0.68 -0.0
2,847,457 - SMc00734 0.68 -0.6
2,847,854 + -0.2
2,847,894 - +0.9
2,847,894 - -0.5
2,847,963 + -0.4
2,847,963 + -2.0
2,847,963 + -0.7
2,847,964 - +1.0
2,847,964 - +1.0
2,848,074 + SMc00733 0.20 -1.1
2,848,075 - SMc00733 0.20 +1.0
2,848,075 - SMc00733 0.20 +0.3
2,848,075 - SMc00733 0.20 -0.3
2,848,351 - SMc00733 0.53 +0.6
2,848,351 - -0.4
2,848,482 + SMc00733 0.69 -0.8
2,848,482 + SMc00733 0.69 +0.0
2,848,482 + SMc00733 0.69 -0.1
2,848,530 + SMc00733 0.74 +0.6
2,848,530 + SMc00733 0.74 -0.0
2,848,531 - SMc00733 0.75 -0.9
2,848,602 + SMc00733 0.83 +0.1
2,848,650 + SMc00733 0.89 +0.5
2,848,650 + SMc00733 0.89 -0.4
2,848,650 + SMc00733 0.89 -0.1
2,848,651 - SMc00733 0.89 -0.2
2,848,651 - SMc00733 0.89 +0.1
2,848,651 - SMc00733 0.89 -0.4
2,848,651 - SMc00733 0.89 +0.0
2,848,651 - SMc00733 0.89 +0.2
2,848,652 + SMc00733 0.89 -0.4
2,848,652 + SMc00733 0.89 -0.3
2,848,652 + SMc00733 0.89 +0.2
2,848,653 - SMc00733 0.89 -0.4
2,848,653 - SMc00733 0.89 +1.0
2,848,653 - SMc00733 0.89 +0.0
2,848,654 + SMc00733 0.89 +0.2
2,848,655 - SMc00733 0.89 +0.8
2,848,717 - -0.2

Or see this region's nucleotide sequence