Strain Fitness in Sinorhizobium meliloti 1021 around SMc00690

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00692 and SMc00691 overlap by 4 nucleotidesSMc00691 and SMc00690 are separated by 63 nucleotidesSMc00690 and SMc00689 are separated by 244 nucleotides SMc00692: SMc00692 - signal peptide protein, at 2,886,203 to 2,886,352 SMc00692 SMc00691: SMc00691 - site-specific tyrosine recombinase XerD, at 2,886,349 to 2,887,284 SMc00691 SMc00690: SMc00690 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 2,887,348 to 2,888,301 SMc00690 SMc00689: SMc00689 - lipoprotein, at 2,888,546 to 2,889,988 SMc00689 Position (kb) 2887 2888 2889Strain fitness (log2 ratio) -2 -1 0 1 2at 2886.357 kb on + strandat 2886.357 kb on + strandat 2886.358 kb on - strandat 2886.370 kb on + strandat 2886.370 kb on + strandat 2886.370 kb on + strandat 2886.371 kb on - strandat 2886.436 kb on + strandat 2886.523 kb on + strand, within SMc00691at 2886.523 kb on + strand, within SMc00691at 2886.523 kb on + strand, within SMc00691at 2886.523 kb on + strand, within SMc00691at 2886.599 kb on - strand, within SMc00691at 2887.158 kb on - strand, within SMc00691at 2887.202 kb on - strandat 2887.203 kb on + strandat 2887.282 kb on + strandat 2887.282 kb on + strandat 2888.345 kb on + strandat 2888.396 kb on + strandat 2888.463 kb on + strandat 2888.471 kb on + strandat 2888.517 kb on + strandat 2888.518 kb on - strandat 2888.888 kb on + strand, within SMc00689at 2888.922 kb on - strand, within SMc00689at 2888.922 kb on - strand, within SMc00689at 2889.254 kb on + strand, within SMc00689at 2889.254 kb on + strand, within SMc00689at 2889.254 kb on + strand, within SMc00689at 2889.254 kb on + strand, within SMc00689at 2889.254 kb on + strand, within SMc00689at 2889.254 kb on + strand, within SMc00689at 2889.254 kb on + strand, within SMc00689at 2889.255 kb on - strand, within SMc00689

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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2,886,357 + +0.0
2,886,357 + -0.1
2,886,358 - +0.0
2,886,370 + -1.3
2,886,370 + -0.4
2,886,370 + +0.3
2,886,371 - -0.4
2,886,436 + -2.3
2,886,523 + SMc00691 0.19 -0.7
2,886,523 + SMc00691 0.19 -0.5
2,886,523 + SMc00691 0.19 -1.1
2,886,523 + SMc00691 0.19 -0.4
2,886,599 - SMc00691 0.27 -0.3
2,887,158 - SMc00691 0.86 -1.6
2,887,202 - -0.6
2,887,203 + -0.8
2,887,282 + +0.8
2,887,282 + +0.1
2,888,345 + -0.3
2,888,396 + +0.6
2,888,463 + +0.4
2,888,471 + +0.3
2,888,517 + +0.0
2,888,518 - -0.6
2,888,888 + SMc00689 0.24 +0.2
2,888,922 - SMc00689 0.26 +1.3
2,888,922 - SMc00689 0.26 +0.5
2,889,254 + SMc00689 0.49 +0.3
2,889,254 + SMc00689 0.49 +0.4
2,889,254 + SMc00689 0.49 +2.0
2,889,254 + SMc00689 0.49 +0.3
2,889,254 + SMc00689 0.49 -1.9
2,889,254 + SMc00689 0.49 +0.2
2,889,254 + SMc00689 0.49 -0.2
2,889,255 - SMc00689 0.49 -0.1

Or see this region's nucleotide sequence