Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00692 and SMc00691 overlap by 4 nucleotides SMc00691 and SMc00690 are separated by 63 nucleotides SMc00690 and SMc00689 are separated by 244 nucleotides
SMc00692: SMc00692 - signal peptide protein, at 2,886,203 to 2,886,352
SMc00692
SMc00691: SMc00691 - site-specific tyrosine recombinase XerD, at 2,886,349 to 2,887,284
SMc00691
SMc00690: SMc00690 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 2,887,348 to 2,888,301
SMc00690
SMc00689: SMc00689 - lipoprotein, at 2,888,546 to 2,889,988
SMc00689
Position (kb)
2887
2888
2889 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2886.357 kb on + strand at 2886.357 kb on + strand at 2886.358 kb on - strand at 2886.370 kb on + strand at 2886.370 kb on + strand at 2886.370 kb on + strand at 2886.371 kb on - strand at 2886.436 kb on + strand at 2886.523 kb on + strand, within SMc00691 at 2886.523 kb on + strand, within SMc00691 at 2886.523 kb on + strand, within SMc00691 at 2886.523 kb on + strand, within SMc00691 at 2886.599 kb on - strand, within SMc00691 at 2887.158 kb on - strand, within SMc00691 at 2887.202 kb on - strand at 2887.203 kb on + strand at 2887.282 kb on + strand at 2887.282 kb on + strand at 2888.345 kb on + strand at 2888.396 kb on + strand at 2888.463 kb on + strand at 2888.471 kb on + strand at 2888.517 kb on + strand at 2888.518 kb on - strand at 2888.888 kb on + strand, within SMc00689 at 2888.922 kb on - strand, within SMc00689 at 2888.922 kb on - strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.254 kb on + strand, within SMc00689 at 2889.255 kb on - strand, within SMc00689
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,886,357 + +0.0 2,886,357 + -0.1 2,886,358 - +0.0 2,886,370 + -1.3 2,886,370 + -0.4 2,886,370 + +0.3 2,886,371 - -0.4 2,886,436 + -2.3 2,886,523 + SMc00691 0.19 -0.7 2,886,523 + SMc00691 0.19 -0.5 2,886,523 + SMc00691 0.19 -1.1 2,886,523 + SMc00691 0.19 -0.4 2,886,599 - SMc00691 0.27 -0.3 2,887,158 - SMc00691 0.86 -1.6 2,887,202 - -0.6 2,887,203 + -0.8 2,887,282 + +0.8 2,887,282 + +0.1 2,888,345 + -0.3 2,888,396 + +0.6 2,888,463 + +0.4 2,888,471 + +0.3 2,888,517 + +0.0 2,888,518 - -0.6 2,888,888 + SMc00689 0.24 +0.2 2,888,922 - SMc00689 0.26 +1.3 2,888,922 - SMc00689 0.26 +0.5 2,889,254 + SMc00689 0.49 +0.3 2,889,254 + SMc00689 0.49 +0.4 2,889,254 + SMc00689 0.49 +2.0 2,889,254 + SMc00689 0.49 +0.3 2,889,254 + SMc00689 0.49 -1.9 2,889,254 + SMc00689 0.49 +0.2 2,889,254 + SMc00689 0.49 -0.2 2,889,255 - SMc00689 0.49 -0.1
Or see this region's nucleotide sequence