Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00598 and SMc00599 are separated by 132 nucleotides SMc00599 and SMc00600 are separated by 4 nucleotides SMc00600 and SMc00601 overlap by 4 nucleotides SMc00601 and SMc00602 are separated by 234 nucleotides
SMc00598: SMc00598 - branched chain amino acid ABC transporter permease, at 1,269,729 to 1,270,625
SMc00598
SMc00599: SMc00599 - molybdopterin MPT converting factor subunit 2, at 1,270,758 to 1,271,225
SMc00599
SMc00600: SMc00600 - molybdopterin MPT converting factor subunit 1, at 1,271,230 to 1,271,490
SMc00600
SMc00601: SMc00601 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,271,487 to 1,272,074
SMc00601
SMc00602: SMc00602 - excinuclease ABC subunit C, at 1,272,309 to 1,274,333
SMc00602
Position (kb)
1271
1272
1273 Strain fitness (log2 ratio)
-1
0
1 at 1270.536 kb on + strand at 1270.537 kb on - strand at 1270.946 kb on + strand, within SMc00599 at 1271.028 kb on + strand, within SMc00599 at 1271.028 kb on + strand, within SMc00599 at 1271.062 kb on + strand, within SMc00599 at 1271.062 kb on + strand, within SMc00599 at 1271.063 kb on - strand, within SMc00599 at 1271.354 kb on + strand, within SMc00600 at 1271.354 kb on + strand, within SMc00600 at 1271.355 kb on - strand, within SMc00600 at 1271.355 kb on - strand, within SMc00600 at 1271.355 kb on - strand, within SMc00600 at 1271.469 kb on - strand at 1272.263 kb on + strand at 1272.264 kb on - strand at 1272.264 kb on - strand at 1272.264 kb on - strand at 1272.341 kb on - strand at 1272.986 kb on + strand, within SMc00602
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,270,536 + -0.9 1,270,537 - +0.6 1,270,946 + SMc00599 0.40 -0.1 1,271,028 + SMc00599 0.58 -0.4 1,271,028 + SMc00599 0.58 -0.4 1,271,062 + SMc00599 0.65 +0.2 1,271,062 + SMc00599 0.65 -0.1 1,271,063 - SMc00599 0.65 -0.8 1,271,354 + SMc00600 0.48 +0.6 1,271,354 + SMc00600 0.48 +0.9 1,271,355 - SMc00600 0.48 +0.5 1,271,355 - SMc00600 0.48 +0.6 1,271,355 - SMc00600 0.48 -0.6 1,271,469 - +0.3 1,272,263 + +0.5 1,272,264 - +0.3 1,272,264 - +0.3 1,272,264 - +0.3 1,272,341 - -0.4 1,272,986 + SMc00602 0.33 -0.7
Or see this region's nucleotide sequence