Strain Fitness in Sinorhizobium meliloti 1021 around SMc00601

Experiment: A22 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00598 and SMc00599 are separated by 132 nucleotidesSMc00599 and SMc00600 are separated by 4 nucleotidesSMc00600 and SMc00601 overlap by 4 nucleotidesSMc00601 and SMc00602 are separated by 234 nucleotides SMc00598: SMc00598 - branched chain amino acid ABC transporter permease, at 1,269,729 to 1,270,625 SMc00598 SMc00599: SMc00599 - molybdopterin MPT converting factor subunit 2, at 1,270,758 to 1,271,225 SMc00599 SMc00600: SMc00600 - molybdopterin MPT converting factor subunit 1, at 1,271,230 to 1,271,490 SMc00600 SMc00601: SMc00601 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,271,487 to 1,272,074 SMc00601 SMc00602: SMc00602 - excinuclease ABC subunit C, at 1,272,309 to 1,274,333 SMc00602 Position (kb) 1271 1272 1273Strain fitness (log2 ratio) -1 0 1at 1270.536 kb on + strandat 1270.537 kb on - strandat 1270.946 kb on + strand, within SMc00599at 1271.028 kb on + strand, within SMc00599at 1271.028 kb on + strand, within SMc00599at 1271.062 kb on + strand, within SMc00599at 1271.062 kb on + strand, within SMc00599at 1271.063 kb on - strand, within SMc00599at 1271.354 kb on + strand, within SMc00600at 1271.354 kb on + strand, within SMc00600at 1271.355 kb on - strand, within SMc00600at 1271.355 kb on - strand, within SMc00600at 1271.355 kb on - strand, within SMc00600at 1271.469 kb on - strandat 1272.263 kb on + strandat 1272.264 kb on - strandat 1272.264 kb on - strandat 1272.264 kb on - strandat 1272.341 kb on - strandat 1272.986 kb on + strand, within SMc00602

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
remove
1,270,536 + -0.9
1,270,537 - +0.6
1,270,946 + SMc00599 0.40 -0.1
1,271,028 + SMc00599 0.58 -0.4
1,271,028 + SMc00599 0.58 -0.4
1,271,062 + SMc00599 0.65 +0.2
1,271,062 + SMc00599 0.65 -0.1
1,271,063 - SMc00599 0.65 -0.8
1,271,354 + SMc00600 0.48 +0.6
1,271,354 + SMc00600 0.48 +0.9
1,271,355 - SMc00600 0.48 +0.5
1,271,355 - SMc00600 0.48 +0.6
1,271,355 - SMc00600 0.48 -0.6
1,271,469 - +0.3
1,272,263 + +0.5
1,272,264 - +0.3
1,272,264 - +0.3
1,272,264 - +0.3
1,272,341 - -0.4
1,272,986 + SMc00602 0.33 -0.7

Or see this region's nucleotide sequence