Strain Fitness in Sinorhizobium meliloti 1021 around SMc00552

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00550 and SMc00551 are separated by 106 nucleotidesSMc00551 and SMc00552 are separated by 9 nucleotidesSMc00552 and SMc00553 are separated by 604 nucleotides SMc00550: SMc00550 - ABC transporter ATP-binding protein, at 1,218,739 to 1,220,622 SMc00550 SMc00551: SMc00551 - phosphatidylserine decarboxylase, at 1,220,729 to 1,221,427 SMc00551 SMc00552: SMc00552 - CDP-diacylglycerol--serine O-phosphatidyltransferase transmembrane protein, at 1,221,437 to 1,222,306 SMc00552 SMc00553: SMc00553 - oxidoreductase, at 1,222,911 to 1,223,651 SMc00553 Position (kb) 1221 1222 1223Strain fitness (log2 ratio) -1 0 1at 1220.490 kb on + strandat 1220.491 kb on - strandat 1220.509 kb on + strandat 1222.370 kb on - strandat 1222.370 kb on - strandat 1222.370 kb on - strandat 1222.750 kb on + strandat 1222.750 kb on + strandat 1222.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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1,220,490 + +0.8
1,220,491 - -0.3
1,220,509 + -1.0
1,222,370 - -0.6
1,222,370 - +1.5
1,222,370 - -0.3
1,222,750 + -0.6
1,222,750 + +0.1
1,222,913 - -0.2

Or see this region's nucleotide sequence