Strain Fitness in Sinorhizobium meliloti 1021 around SMc00355

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00354 and SMc00355 are separated by 317 nucleotidesSMc00355 and SMc00356 overlap by 4 nucleotides SMc00354: SMc00354 - hypothetical protein, at 309,005 to 309,670 SMc00354 SMc00355: SMc00355 - hypothetical protein, at 309,988 to 311,040 SMc00355 SMc00356: SMc00356 - lysyl-tRNA synthetase, at 311,037 to 312,089 SMc00356 Position (kb) 309 310 311 312Strain fitness (log2 ratio) -2 -1 0 1at 309.822 kb on - strandat 309.862 kb on + strandat 309.877 kb on + strandat 309.904 kb on + strandat 310.041 kb on - strandat 310.118 kb on + strand, within SMc00355at 310.238 kb on + strand, within SMc00355at 310.421 kb on + strand, within SMc00355at 310.421 kb on + strand, within SMc00355at 310.421 kb on + strand, within SMc00355at 310.421 kb on + strand, within SMc00355at 310.422 kb on - strand, within SMc00355at 310.422 kb on - strand, within SMc00355at 310.422 kb on - strand, within SMc00355at 310.634 kb on + strand, within SMc00355at 311.200 kb on + strand, within SMc00356at 311.303 kb on - strand, within SMc00356at 311.303 kb on - strand, within SMc00356at 311.303 kb on - strand, within SMc00356at 311.459 kb on + strand, within SMc00356at 311.459 kb on + strand, within SMc00356at 311.635 kb on + strand, within SMc00356at 311.635 kb on + strand, within SMc00356at 311.786 kb on - strand, within SMc00356at 311.866 kb on + strand, within SMc00356

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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309,822 - -0.4
309,862 + -1.2
309,877 + -0.0
309,904 + -0.4
310,041 - -0.7
310,118 + SMc00355 0.12 -0.1
310,238 + SMc00355 0.24 -0.5
310,421 + SMc00355 0.41 -0.7
310,421 + SMc00355 0.41 +1.6
310,421 + SMc00355 0.41 +0.2
310,421 + SMc00355 0.41 -0.4
310,422 - SMc00355 0.41 +0.2
310,422 - SMc00355 0.41 -1.3
310,422 - SMc00355 0.41 +1.2
310,634 + SMc00355 0.61 -0.2
311,200 + SMc00356 0.15 -1.9
311,303 - SMc00356 0.25 -0.2
311,303 - SMc00356 0.25 +0.1
311,303 - SMc00356 0.25 +0.2
311,459 + SMc00356 0.40 -0.2
311,459 + SMc00356 0.40 +0.8
311,635 + SMc00356 0.57 -0.3
311,635 + SMc00356 0.57 -0.8
311,786 - SMc00356 0.71 +0.3
311,866 + SMc00356 0.79 +0.1

Or see this region's nucleotide sequence