Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00090 and SMc00091 overlap by 1 nucleotides SMc00091 and SMc00092 are separated by 47 nucleotides
SMc00090: SMc00090 - sulfate adenylyltransferase, at 1,034,852 to 1,036,348
SMc00090
SMc00091: SMc00091 - sulfate adenylyltransferase, at 1,036,348 to 1,037,301
SMc00091
SMc00092: SMc00092 - phosphoadenosine phosphosulfate reductase, at 1,037,349 to 1,038,146
SMc00092
Position (kb)
1036
1037
1038 Strain fitness (log2 ratio)
-2
-1
0
1 at 1035.666 kb on + strand, within SMc00090 at 1035.666 kb on + strand, within SMc00090 at 1035.666 kb on + strand, within SMc00090 at 1035.667 kb on - strand, within SMc00090 at 1035.693 kb on + strand, within SMc00090 at 1035.694 kb on - strand, within SMc00090 at 1035.810 kb on + strand, within SMc00090 at 1035.811 kb on - strand, within SMc00090 at 1035.975 kb on + strand, within SMc00090 at 1035.975 kb on + strand, within SMc00090 at 1035.976 kb on - strand, within SMc00090 at 1036.301 kb on + strand at 1036.301 kb on + strand at 1036.606 kb on + strand, within SMc00091 at 1036.632 kb on - strand, within SMc00091 at 1036.650 kb on + strand, within SMc00091 at 1036.667 kb on + strand, within SMc00091 at 1036.668 kb on - strand, within SMc00091 at 1036.743 kb on + strand, within SMc00091 at 1036.745 kb on + strand, within SMc00091 at 1036.746 kb on - strand, within SMc00091 at 1036.811 kb on + strand, within SMc00091 at 1036.811 kb on + strand, within SMc00091 at 1036.811 kb on + strand, within SMc00091 at 1036.811 kb on + strand, within SMc00091 at 1036.812 kb on - strand, within SMc00091 at 1036.927 kb on - strand, within SMc00091 at 1036.928 kb on + strand, within SMc00091 at 1036.929 kb on - strand, within SMc00091 at 1036.929 kb on - strand, within SMc00091 at 1036.929 kb on - strand, within SMc00091 at 1036.929 kb on - strand, within SMc00091 at 1037.010 kb on - strand, within SMc00091 at 1037.010 kb on - strand, within SMc00091 at 1037.103 kb on - strand, within SMc00091 at 1037.103 kb on - strand, within SMc00091 at 1037.156 kb on + strand, within SMc00091 at 1037.156 kb on + strand, within SMc00091 at 1037.292 kb on + strand at 1037.689 kb on + strand, within SMc00092 at 1037.770 kb on + strand, within SMc00092 at 1037.789 kb on - strand, within SMc00092 at 1037.789 kb on - strand, within SMc00092 at 1037.800 kb on + strand, within SMc00092 at 1037.800 kb on + strand, within SMc00092 at 1037.800 kb on + strand, within SMc00092 at 1037.800 kb on + strand, within SMc00092 at 1037.828 kb on - strand, within SMc00092 at 1037.830 kb on + strand, within SMc00092 at 1037.830 kb on + strand, within SMc00092 at 1037.831 kb on - strand, within SMc00092 at 1037.831 kb on - strand, within SMc00092 at 1037.851 kb on + strand, within SMc00092 at 1037.851 kb on + strand, within SMc00092 at 1037.851 kb on + strand, within SMc00092 at 1037.852 kb on - strand, within SMc00092 at 1037.957 kb on + strand, within SMc00092 at 1037.991 kb on - strand, within SMc00092 at 1038.240 kb on + strand at 1038.241 kb on - strand at 1038.256 kb on - strand at 1038.273 kb on + strand at 1038.274 kb on - strand at 1038.276 kb on + strand at 1038.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,035,666 + SMc00090 0.54 -0.1 1,035,666 + SMc00090 0.54 +1.3 1,035,666 + SMc00090 0.54 +0.3 1,035,667 - SMc00090 0.54 +0.2 1,035,693 + SMc00090 0.56 -0.2 1,035,694 - SMc00090 0.56 -0.6 1,035,810 + SMc00090 0.64 +0.3 1,035,811 - SMc00090 0.64 +0.0 1,035,975 + SMc00090 0.75 +0.1 1,035,975 + SMc00090 0.75 -0.4 1,035,976 - SMc00090 0.75 -0.1 1,036,301 + -0.1 1,036,301 + +0.1 1,036,606 + SMc00091 0.27 -1.8 1,036,632 - SMc00091 0.30 -0.4 1,036,650 + SMc00091 0.32 +0.7 1,036,667 + SMc00091 0.33 -1.2 1,036,668 - SMc00091 0.34 +0.1 1,036,743 + SMc00091 0.41 +0.3 1,036,745 + SMc00091 0.42 +1.1 1,036,746 - SMc00091 0.42 +1.1 1,036,811 + SMc00091 0.49 +0.6 1,036,811 + SMc00091 0.49 +0.1 1,036,811 + SMc00091 0.49 +0.7 1,036,811 + SMc00091 0.49 -0.2 1,036,812 - SMc00091 0.49 +0.4 1,036,927 - SMc00091 0.61 +0.7 1,036,928 + SMc00091 0.61 +1.3 1,036,929 - SMc00091 0.61 +0.6 1,036,929 - SMc00091 0.61 -0.1 1,036,929 - SMc00091 0.61 -0.1 1,036,929 - SMc00091 0.61 -0.5 1,037,010 - SMc00091 0.69 -0.2 1,037,010 - SMc00091 0.69 +0.3 1,037,103 - SMc00091 0.79 +1.5 1,037,103 - SMc00091 0.79 -0.3 1,037,156 + SMc00091 0.85 +0.3 1,037,156 + SMc00091 0.85 -0.8 1,037,292 + -0.4 1,037,689 + SMc00092 0.43 -0.1 1,037,770 + SMc00092 0.53 +0.2 1,037,789 - SMc00092 0.55 -0.3 1,037,789 - SMc00092 0.55 -0.2 1,037,800 + SMc00092 0.57 +0.4 1,037,800 + SMc00092 0.57 -0.0 1,037,800 + SMc00092 0.57 -0.4 1,037,800 + SMc00092 0.57 +0.0 1,037,828 - SMc00092 0.60 +0.2 1,037,830 + SMc00092 0.60 +0.5 1,037,830 + SMc00092 0.60 +0.2 1,037,831 - SMc00092 0.60 -0.9 1,037,831 - SMc00092 0.60 -0.6 1,037,851 + SMc00092 0.63 -1.2 1,037,851 + SMc00092 0.63 -1.2 1,037,851 + SMc00092 0.63 -0.0 1,037,852 - SMc00092 0.63 -0.5 1,037,957 + SMc00092 0.76 -0.0 1,037,991 - SMc00092 0.80 -0.1 1,038,240 + -0.5 1,038,241 - -0.4 1,038,256 - +0.7 1,038,273 + -0.8 1,038,274 - +0.1 1,038,276 + -0.4 1,038,289 + -0.0
Or see this region's nucleotide sequence